chr3 : 3,464,020 3,464,479
459 bp 41 TFs 0 linked genes
This 459 bp open chromatin element has no linked target genes and is bound by 41 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:3,459,020 – 3,469,479
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_GFP_shFOXA1_Ethanol GSE128883.AR.LNCaP_GFP_shFOXA1_Ethanol 224 bp overlap
Ar 1 dataset
Motif DE_36h DE_36h-Ar_MA0007.4 16 bp overlap
BCL6B 1 dataset
Motif DE_36h DE_36h-BCL6B_MA0731.1 17 bp overlap
DMRT3 1 dataset
Motif DE_36h DE_36h-DMRT3_MA0610.2 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 239 bp overlap
EZH2 1 dataset
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 232 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 266 bp overlap
ChIP DE DE-GATA4-2 336 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 320 bp overlap
ChIP DE DE-GATA6-2 301 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 425 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 291 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 364 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 295 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 322 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 427 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 317 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 322 bp overlap
HNF4A 1 dataset
Motif DE_36h DE_36h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_36h DE_36h-HNF4G_MA0484.3 9 bp overlap
IRF2 1 dataset
Motif DE_36h DE_36h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_36h DE_36h-IRF3_MA1418.2 17 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 216 bp overlap
NFKB2 1 dataset
Motif DE_36h DE_36h-NFKB2_MA0778.2 11 bp overlap
NR2C2 1 dataset
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
NR2F1 1 dataset
Motif DE_36h DE_36h-NR2F1_MA1537.2 13 bp overlap
PGR 1 dataset
Motif DE_36h DE_36h-PGR_MA2327.1 9 bp overlap
PPARD 1 dataset
Motif DE_36h DE_36h-PPARD_MA1550.2 14 bp overlap
Prdm4 1 dataset
Motif DE_36h DE_36h-Prdm4_MA1647.3 11 bp overlap
RFX4 1 dataset
Motif DE_36h DE_36h-RFX4_MA0799.3 13 bp overlap
RFX7 1 dataset
Motif DE_36h DE_36h-RFX7_MA1554.2 8 bp overlap
RREB1 2 datasets
Motif DE_36h DE_36h-RREB1_MA0073.2 19 bp overlap
Motif DE_48h DE_48h-RREB1_MA0073.2 19 bp overlap
RXRB 1 dataset
Motif DE_36h DE_36h-RXRB_MA0855.1 14 bp overlap
Rfx6 1 dataset
Motif DE_36h DE_36h-Rfx6_MA1724.2 9 bp overlap
Rhox11 2 datasets
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
Motif DE_48h DE_48h-Rhox11_MA0629.2 9 bp overlap
Rxra 1 dataset
Motif DE_36h DE_36h-Rxra_MA0512.2 14 bp overlap
Six3 1 dataset
Motif DE_36h DE_36h-Six3_MA0631.2 11 bp overlap
TEAD1 1 dataset
Motif DE_36h DE_36h-TEAD1_MA0090.4 9 bp overlap
TEAD4 1 dataset
Motif DE_36h DE_36h-TEAD4_MA0809.3 8 bp overlap
THRB 1 dataset
Motif DE_36h DE_36h-THRB_MA1574.2 13 bp overlap
ZNF257 1 dataset
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
ZNF282 1 dataset
Motif DE_36h DE_36h-ZNF282_MA1154.2 15 bp overlap
ZNF410 1 dataset
Motif DE_36h DE_36h-ZNF410_MA0752.2 16 bp overlap
ZNF707 1 dataset
Motif DE_36h DE_36h-ZNF707_MA1715.1 15 bp overlap
Zfp335 1 dataset
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap