chr2 : 147,365,269 – 147,365,976
707 bp 55 TFs 0 linked genes
This 707 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:147,360,269 – 147,370,976
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
Ascl2 2 datasets
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
Motif DE_36h DE_36h-Ascl2_MA0816.1 10 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
BRD2 1 dataset
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 64 bp overlap
BRD4 3 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 217 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 58 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CTCF 34 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 362 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 207 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 260 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 367 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 217 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 352 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 456 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 356 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 383 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 338 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 339 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 159 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 271 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 365 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 155 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 166 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 131 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 485 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF641PIN 431 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 305 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 113 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 286 bp overlap
ChIP gastrocnemius medialis ENCFF307PRR 457 bp overlap
ChIP gastrocnemius-medialis ENCSR594NSU.CTCF.gastrocnemius-medialis 247 bp overlap
ChIP gastroesophageal-sphincter ENCSR661XNQ.CTCF.gastroesophageal-sphincter 235 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 233 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 157 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 169 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 103 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 309 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 195 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 238 bp overlap
DPRX 1 dataset
Motif DE_36h DE_36h-DPRX_MA1480.2 9 bp overlap
DUX4 1 dataset
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
E2F8 1 dataset
ChIP HepG2 ENCFF117UYU 235 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 298 bp overlap
ESR1 1 dataset
ChIP MCF-7_MRNAHIST ERP002305.ESR1.MCF-7_MRNAHIST 167 bp overlap
FOXA2 1 dataset
ChIP HepG2 ENCFF570ABM 126 bp overlap
FOXS1 2 datasets
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Motif DE_36h DE_36h-FOXS1_MA2118.1 8 bp overlap
GATA1 1 dataset
Motif DE_36h DE_36h-GATA1_MA0035.5 7 bp overlap
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 557 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 302 bp overlap
HIC2 2 datasets
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap
IKZF1 1 dataset
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 304 bp overlap
ISL2 1 dataset
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
ChIP HepG2 ENCFF057YJE 245 bp overlap
MYOG 2 datasets
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
Motif DE_36h DE_36h-MYOG_MA0500.3 8 bp overlap
MZF1 1 dataset
Motif DE_36h DE_36h-MZF1_MA0056.3 8 bp overlap
NHLH1 2 datasets
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Motif DE_36h DE_36h-NHLH1_MA0048.3 9 bp overlap
NKX2-3 1 dataset
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Nkx3-2 1 dataset
Motif DE_36h DE_36h-Nkx3-2_MA0122.4 10 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
RAD21 10 datasets
ChIP GP5D GSE51234.RAD21.GP5D 265 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 593 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 444 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 506 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 399 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 134 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 168 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 254 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
RUNX1 1 dataset
ChIP 697 GSE138031.RUNX1.697 73 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 360 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 360 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 170 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 381 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 314 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 707 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 540 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 249 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 206 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 129 bp overlap
SMC1 2 datasets
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 298 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 228 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 450 bp overlap
SPI1 1 dataset
ChIP DC_LPS GSE123347.SPI1.DC_LPS 105 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 297 bp overlap
TEAD2 2 datasets
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
Motif DE_36h DE_36h-TEAD2_MA1121.2 7 bp overlap
TEAD4 2 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif DE_36h DE_36h-TEAD4_MA0809.3 8 bp overlap
TFAP4::FLI1 2 datasets
Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif DE_36h DE_36h-TFAP4FLI1_MA1967.2 14 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
ZNF140 1 dataset
Motif DE_36h DE_36h-ZNF140_MA1589.2 19 bp overlap
ZNF143 6 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap
ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 187 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 372 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 248 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 114 bp overlap
ZNF317 1 dataset
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 145 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF76 2 datasets
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Motif DE_36h DE_36h-ZNF76_MA1716.2 17 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
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