chr2 : 125,710,695 – 125,711,025
330 bp 31 TFs 1 linked gene
This 330 bp open chromatin element is linked to LINC01889 and is bound by 31 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01889 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:125,705,695 – 125,716,025
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
AR 3 datasets
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 81 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 126 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 95 bp overlap
ARID1A 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 330 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 151 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 114 bp overlap
ARNT 3 datasets
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 133 bp overlap
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 125 bp overlap
ChIP T-47D GSE130989.ARNT.T-47D 134 bp overlap
BRD4 1 dataset
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 88 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 85 bp overlap
CTCF 4 datasets
ChIP H1 ENCFF764RHO 205 bp overlap
ChIP endodermal cell ENCFF471YCZ 286 bp overlap
ChIP neural crest cell ENCFF182LWK 297 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 175 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 201 bp overlap
ChIP BLaER1 ENCFF460KDD 109 bp overlap
EP300 2 datasets
ChIP MCF-7 ENCFF508OAU 108 bp overlap
ChIP MCF-7_shCtrl GSE128445.EP300.MCF-7_shCtrl 72 bp overlap
ESR1 33 datasets
ChIP MCF-7_4OH-Tam GSE117941.ESR1.MCF-7_4OH-Tam 132 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 87 bp overlap
ChIP MCF-7_E2 GSE117941.ESR1.MCF-7_E2 85 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 170 bp overlap
ChIP MCF-7_Fulv GSE117941.ESR1.MCF-7_Fulv 119 bp overlap
ChIP MCF-7_Fulvestrant_HC11 GSE102882.ESR1.MCF-7_Fulvestrant_HC11 56 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 113 bp overlap
ChIP MCF-7_GDC-0927 GSE117941.ESR1.MCF-7_GDC-0927 108 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 92 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 80 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 121 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 170 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 83 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.ESR1.MCF-7_Tamoxifen 108 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 64 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 118 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 79 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 84 bp overlap
ChIP MCF-7_shCtrl_TamR GSE128445.ESR1.MCF-7_shCtrl_TamR 102 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 134 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 123 bp overlap
ChIP T-47D_D538G GSE148277.ESR1.T-47D_D538G 95 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 93 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 76 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 60 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 148 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 143 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 90 bp overlap
ChIP ZR751 GSE72249.ESR1.ZR751 115 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 96 bp overlap
ChIP breast_tumor_Male_15 GSE104399.ESR1.breast_tumor_Male_15 240 bp overlap
ChIP breast_tumor_Male_5 GSE104399.ESR1.breast_tumor_Male_5 102 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.ESR1.primary-breast-cancer_B1_DSG 59 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 140 bp overlap
ESRRA 1 dataset
ChIP BT-474 GSE81651.ESRRA.BT-474 119 bp overlap
FOXA1 28 datasets
ChIP MCF-7 ERP001226.FOXA1.MCF-7 92 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 87 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 51 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 92 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 122 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 102 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 59 bp overlap
ChIP MCF-7_shNR2F2 GSE132432.FOXA1.MCF-7_shNR2F2 102 bp overlap
ChIP T-47D GSE72249.FOXA1.T-47D 102 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 128 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 118 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 75 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 76 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 104 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 134 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 136 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 118 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 92 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 126 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 67 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 62 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 118 bp overlap
ChIP breast-cancer_heregulin-Herceptin-ICI GSE101407.FOXA1.breast-cancer_heregulin-Herceptin-ICI 87 bp overlap
ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 223 bp overlap
ChIP breast_tumor_Female_1 GSE104399.FOXA1.breast_tumor_Female_1 111 bp overlap
ChIP breast_tumor_Female_1 GSE104399.FOXA1.breast_tumor_Female_1 142 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 104 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 69 bp overlap
GATA3 6 datasets
ChIP MCF-7 GSE133072.GATA3.MCF-7 60 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 103 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 71 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 138 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 127 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 85 bp overlap
GATA4 2 datasets
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 330 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 330 bp overlap
GATA6 2 datasets
ChIP foregut GSE117136.GATA6.foregut 330 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 330 bp overlap
GRHL2 5 datasets
ChIP HBE GSE46194.GRHL2.HBE 142 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 123 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 159 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 123 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 141 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 91 bp overlap
NR3C1 2 datasets
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 153 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 120 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 330 bp overlap
PGR 3 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 76 bp overlap
ChIP T-47D-A_E2_R5020 GSE80358.PGR.T-47D-A_E2_R5020 124 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 149 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCFF521RDC 246 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 131 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 132 bp overlap
SMARCA4 1 dataset
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 86 bp overlap
SMARCB1 4 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 59 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 156 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 101 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 157 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 291 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 82 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 133 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE114213.TRPS1.T-47D 128 bp overlap
VDR 1 dataset
ChIP LS180_125 GSE31939.VDR.LS180_125 200 bp overlap
YY1AP1 1 dataset
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 90 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 256 bp overlap
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