chr2 : 125,386,095 – 125,386,559
464 bp 64 TFs 0 linked genes
This 464 bp open chromatin element has no linked target genes and is bound by 64 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:125,381,095 – 125,391,559
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
ARGFX 1 dataset
Motif DE_12h DE_12h-ARGFX_MA1463.2 8 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA0818.2 10 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA0818.2 10 bp overlap
BHLHE23 2 datasets
Motif DE_12h DE_12h-BHLHE23_MA0817.2 10 bp overlap
Motif ES_0h ES_0h-BHLHE23_MA0817.2 10 bp overlap
BRD4 1 dataset
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 165 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CTCF 64 datasets
ChIP BC-3 GSE135740.CTCF.BC-3 332 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 283 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 464 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 252 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 132 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 191 bp overlap
ChIP GM12864 ENCFF357DQE 285 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 323 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 123 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 121 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 181 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 245 bp overlap
ChIP GM12872 ENCFF697BYI 285 bp overlap
ChIP GM12873 ENCFF711LOS 285 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 112 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 160 bp overlap
ChIP GM12875 ENCFF081UCQ 257 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 160 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 131 bp overlap
ChIP GM23338 ENCFF531QOI 413 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GM23338 ENCFF832KWE 464 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 364 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 85 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 243 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 179 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 182 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 342 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 307 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 89 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 170 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 243 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 156 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 126 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 221 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 214 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 153 bp overlap
ChIP NCI-H929 ENCFF305JAB 464 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 366 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 411 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 180 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 232 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 154 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 118 bp overlap
ChIP endodermal cell ENCFF471YCZ 348 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 402 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 250 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 297 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 137 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 208 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 163 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 185 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 149 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 273 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP neural progenitor cell ENCFF581WPG 329 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 351 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 270 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 156 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 160 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
EBF3 2 datasets
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
Motif ES_0h ES_0h-EBF3_MA1637.2 9 bp overlap
Ebf2 2 datasets
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Motif ES_0h ES_0h-Ebf2_MA1604.2 9 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
GATA4 1 dataset
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 424 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
IRF4 1 dataset
Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
KLF11 2 datasets
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 356 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NKX2-2 2 datasets
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 2 datasets
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
Motif ES_0h ES_0h-NKX2-5_MA0063.3 7 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1538.1 15 bp overlap
NR2F6 1 dataset
Motif DE_12h DE_12h-NR2F6_MA1539.1 15 bp overlap
NR4A2::RXRA 1 dataset
Motif DE_12h DE_12h-NR4A2RXRA_MA1147.2 13 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
OLIG2 2 datasets
Motif DE_12h DE_12h-OLIG2_MA0678.1 10 bp overlap
Motif ES_0h ES_0h-OLIG2_MA0678.1 10 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 167 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 241 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 116 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SP8 2 datasets
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TCF12 1 dataset
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 3 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0524.3 11 bp overlap
ZBED4 1 dataset
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF157 2 datasets
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
Motif ES_0h ES_0h-ZNF157_MA2331.1 21 bp overlap
ZNF418 2 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
ZNF549 2 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZSCAN21 2 datasets
Motif DE_12h DE_12h-ZSCAN21_MA2336.1 7 bp overlap
Motif ES_0h ES_0h-ZSCAN21_MA2336.1 7 bp overlap
ZSCAN31 1 dataset
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap
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