chr2 : 53,509,880 53,510,329
449 bp 47 TFs 0 linked genes
This 449 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:53,504,880 – 53,515,329
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 246 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 218 bp overlap
BRD4 11 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 310 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 255 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 265 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 183 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 303 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 315 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 189 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 189 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 326 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 365 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 334 bp overlap
CREBBP 1 dataset
ChIP retina_Hu29 GSE137311.CREBBP.retina_Hu29 254 bp overlap
CTCF 1 dataset
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 205 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 214 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 234 bp overlap
EP300 1 dataset
ChIP upper lobe of left lung ENCFF024QBJ 261 bp overlap
ESR1 8 datasets
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 181 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 165 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 141 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 377 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 240 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 449 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 379 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 268 bp overlap
ESRRA 2 datasets
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 252 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 348 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 304 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 350 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 434 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 338 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 296 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 384 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 361 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 318 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 88 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 246 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 273 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 173 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 340 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 312 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 449 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 449 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 407 bp overlap
ChIP hESC GSE20650.NANOG.hESC 224 bp overlap
ChIP hESC GSE18292.NANOG.hESC 196 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 239 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 406 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 323 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 200 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 357 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 310 bp overlap
POU5F1 4 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 404 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 395 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 284 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 164 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 236 bp overlap
RARA 4 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 371 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 280 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 259 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 285 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 216 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 347 bp overlap
SMARCC1 2 datasets
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 273 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 233 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 315 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 449 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 258 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 271 bp overlap
TEAD4 3 datasets
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 246 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 212 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 124 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 191 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 449 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 358 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 141 bp overlap
YY1 3 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 331 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 136 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 228 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 225 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 178 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 288 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap