Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

48 transcription factors

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

CTCF 26 datasets

Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap

ChIP GM23338 ENCFF772DML 175 bp overlap

ChIP H1 ENCFF764RHO 175 bp overlap

ChIP H9 ENCFF152GTF 131 bp overlap

ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 144 bp overlap

ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 139 bp overlap

ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 128 bp overlap

ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 106 bp overlap

ChIP WA01 ENCSR000DLK.CTCF.WA01 109 bp overlap

ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 113 bp overlap

ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 175 bp overlap

ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 175 bp overlap

ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 175 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 175 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 175 bp overlap

ChIP endodermal cell ENCFF471YCZ 175 bp overlap

ChIP hESC_D0 GSE116862.CTCF.hESC_D0 173 bp overlap

ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 124 bp overlap

ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 167 bp overlap

ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 151 bp overlap

ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 129 bp overlap

ChIP islet ERP004003.CTCF.islet 175 bp overlap

ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 94 bp overlap

ChIP neural ENCSR822CEA.CTCF.neural 175 bp overlap

ChIP neural cell ENCFF335ADI 175 bp overlap

ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 170 bp overlap

DDX5 1 dataset

ChIP NTERA2 GSE58641.DDX5.NTERA2 157 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

HIF1A 1 dataset

ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 133 bp overlap

MAX 1 dataset

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 175 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MXI1 1 dataset

ChIP neural ENCSR934NHU.MXI1.neural 164 bp overlap

MYOD1 1 dataset

Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap

MZF1 1 dataset

Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap

NANOG 1 dataset

ChIP HUES-8 GSE109524.NANOG.HUES-8 160 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PKNOX2 1 dataset

Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap

POLR2A 1 dataset

ChIP neural cell ENCFF604SPB 175 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap

RAD21 6 datasets

ChIP H1 ENCFF698EWO 175 bp overlap

ChIP H1 ENCFF967OJF 175 bp overlap

ChIP SK-N-SH ENCFF747MAS 175 bp overlap

ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 126 bp overlap

ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 134 bp overlap

ChIP neural cell ENCFF564MOT 175 bp overlap

SCRT1 1 dataset

Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap

SCRT2 1 dataset

Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap

SIX2 1 dataset

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 137 bp overlap

SMAD3 1 dataset

ChIP BG03 GSE36578.SMAD3.BG03 116 bp overlap

SMC3 1 dataset

ChIP neural cell ENCFF795YGY 175 bp overlap

SNAI2 1 dataset

Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap

SNAI3 1 dataset

Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 175 bp overlap

SREBF1 1 dataset

Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap

Six3 1 dataset

Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap

Sox17 1 dataset

Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap

Sox7 1 dataset

Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap

TBX1 1 dataset

Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap

TBX15 1 dataset

Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap

TBX18 1 dataset

Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap

TBX2 1 dataset

Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap

TBX3 1 dataset

Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap

TBX4 1 dataset

Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap

TBX5 1 dataset

Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap

TFAP4 1 dataset

Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap

TGIF1 1 dataset

Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap

TGIF2 1 dataset

Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap

TGIF2LX 1 dataset

Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap

TGIF2LY 1 dataset

Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

VEZF1 1 dataset

Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZNF320 1 dataset

Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap

ZNF343 1 dataset

Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap

ZNF93 1 dataset

Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap

Gene	Expression	Dist. to TSS	Distance	Link type
NRXN1		1.6 kb	Proximal	Proximity
NRXN1-DT		2.1 kb	Proximal	Proximity

Genome Browser