chr2 : 49,103,815 – 49,104,401

586 bp 60 TFs 0 linked genes

This 586 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

60 transcription factors

Arid3a 3 datasets

Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap

Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap

BCL11A 1 dataset

Motif DE_60h DE_60h-BCL11A_MA2324.1 7 bp overlap

CREB1 1 dataset

ChIP A-549 ENCSR000BRC.CREB1.A-549 115 bp overlap

Crx 2 datasets

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap

DUX4 2 datasets

Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap

ChIP WA01 GSE94322.DUX4.WA01 372 bp overlap

DUXA 1 dataset

Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap

Dux 3 datasets

Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap

Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap

ESRRB 2 datasets

Motif DE_60h DE_60h-ESRRB_MA0141.4 10 bp overlap

Motif DE_72h DE_72h-ESRRB_MA0141.4 10 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 402 bp overlap

ChIP DE DE-FOXA2-2 398 bp overlap

FOXO1::ELK3 2 datasets

Motif DE_60h DE_60h-FOXO1ELK3_MA1955.2 13 bp overlap

Motif DE_72h DE_72h-FOXO1ELK3_MA1955.2 13 bp overlap

GATA1 2 datasets

Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap

Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap

GATA3 2 datasets

ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 152 bp overlap

ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 172 bp overlap

GATA4 5 datasets

ChIP DE DE-GATA4-1 582 bp overlap

ChIP DE DE-GATA4-2 586 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap

ChIP foregut GSE117136.GATA4.foregut 453 bp overlap

GATA6 5 datasets

ChIP DE DE-GATA6-1 535 bp overlap

ChIP DE DE-GATA6-2 586 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 428 bp overlap

ChIP foregut GSE117136.GATA6.foregut 481 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 259 bp overlap

GSC 2 datasets

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap

GSC2 2 datasets

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap

HOXA3 1 dataset

Motif DE_60h DE_60h-HOXA3_MA2119.1 7 bp overlap

HOXA4 1 dataset

Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap

HOXB4 1 dataset

Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap

HOXD4 1 dataset

Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap

IKZF2 2 datasets

Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap

Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap

INSM1 2 datasets

Motif DE_60h DE_60h-INSM1_MA0155.1 12 bp overlap

Motif DE_72h DE_72h-INSM1_MA0155.1 12 bp overlap

LHX6 1 dataset

Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap

MAFF 2 datasets

Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap

Motif DE_72h DE_72h-MAFF_MA0495.4 11 bp overlap

Mafb 2 datasets

Motif DE_60h DE_60h-Mafb_MA0117.3 11 bp overlap

Motif DE_72h DE_72h-Mafb_MA0117.3 11 bp overlap

NKX6-3 1 dataset

Motif DE_60h DE_60h-NKX6-3_MA1530.2 8 bp overlap

NR2C1 1 dataset

Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap

NR2F1 1 dataset

Motif DE_60h DE_60h-NR2F1_MA0017.3 12 bp overlap

NR2F2 1 dataset

Motif DE_60h DE_60h-NR2F2_MA1111.2 7 bp overlap

NR4A1 1 dataset

Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap

NR4A2 1 dataset

Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap

NRL 2 datasets

Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap

Motif DE_72h DE_72h-NRL_MA0842.3 12 bp overlap

Nr1H2 1 dataset

Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap

Nr2e1 1 dataset

Motif DE_60h DE_60h-Nr2e1_MA0676.1 9 bp overlap

Nr5A2 2 datasets

Motif DE_60h DE_60h-Nr5A2_MA0505.3 9 bp overlap

Motif DE_72h DE_72h-Nr5A2_MA0505.3 9 bp overlap

OTX1 2 datasets

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap

PHOX2A 1 dataset

Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap

PITX1 2 datasets

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap

PITX3 2 datasets

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap

POU6F2 1 dataset

Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap

PPARA::RXRA 2 datasets

Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap

PROP1 1 dataset

Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap

Ppara 1 dataset

Motif DE_60h DE_60h-Ppara_MA2338.1 7 bp overlap

Pparg::Rxra 1 dataset

Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap

Prdm4 2 datasets

Motif DE_60h DE_60h-Prdm4_MA1647.3 11 bp overlap

Motif DE_72h DE_72h-Prdm4_MA1647.3 11 bp overlap

RARB 1 dataset

Motif DE_60h DE_60h-RARB_MA1552.2 13 bp overlap

RARG 1 dataset

Motif DE_60h DE_60h-RARG_MA1553.2 13 bp overlap

RBPJ 2 datasets

Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap

Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap

RHOXF1 2 datasets

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap

RXRG 1 dataset

Motif DE_60h DE_60h-RXRG_MA1556.1 14 bp overlap

Rarg 1 dataset

Motif DE_60h DE_60h-Rarg_MA0860.1 17 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 387 bp overlap

SMAD3 1 dataset

ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap

SPIB 1 dataset

ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 187 bp overlap

TFAP2A 1 dataset

ChIP WA09 GSE105081.TFAP2A.WA09 156 bp overlap