chrX : 113,990,691 – 113,991,194

503 bp 58 TFs 1 linked gene

This 503 bp open chromatin element is linked to XACT and is bound by 58 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
XACT		781 bp	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

58 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 203 bp overlap

ATOH7 1 dataset

Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap

CBFA2T3 1 dataset

ChIP K562 ENCFF673OEZ 121 bp overlap

CHD1 1 dataset

ChIP WA01 ENCSR000AQK.CHD1.WA01 223 bp overlap

CTCF 1 dataset

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 262 bp overlap

Crx 1 dataset

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

Dmbx1 1 dataset

Motif DE_12h DE_12h-Dmbx1_MA0883.2 10 bp overlap

ETV2::FIGLA 1 dataset

Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 503 bp overlap

ChIP DE DE-FOXA2-2 478 bp overlap

GATA1 1 dataset

ChIP K-562 GSE107726.GATA1.K-562 262 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 503 bp overlap

ChIP DE DE-GATA4-2 499 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 271 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 276 bp overlap

GATA6 2 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 445 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 363 bp overlap

GSC 1 dataset

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

HMBOX1 3 datasets

ChIP K-562 ENCSR757IIU.HMBOX1.K-562 219 bp overlap

ChIP K562 ENCFF055GAZ 183 bp overlap

ChIP K562 ENCFF317JJX 355 bp overlap

JUN 3 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 250 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 274 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 260 bp overlap

KLF4 1 dataset

ChIP HAP1 GSE130417.KLF4.HAP1 208 bp overlap

MAF 1 dataset

Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap

MAF::NFE2 1 dataset

Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap

MAFA 1 dataset

Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap

MAFG::NFE2L1 1 dataset

Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap

MAFK 1 dataset

Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap

MAX 2 datasets

ChIP K562 ENCFF524IJO 295 bp overlap

ChIP WTC11 ENCFF223QFY 369 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MXI1 1 dataset

Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap

Mafg 1 dataset

Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap

NANOG 4 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 291 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 278 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 311 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 188 bp overlap

NEUROG1 1 dataset

Motif DE_12h DE_12h-NEUROG1_MA0623.2 10 bp overlap

Nfe2l2 1 dataset

Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap

OTX1 1 dataset

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

ChIP WTC11 ENCFF634NAO 220 bp overlap

PAX3 1 dataset

Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap

PHIP 1 dataset

ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 86 bp overlap

PHOX2A 1 dataset

Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap

PITX1 1 dataset

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

POU5F1 4 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 260 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 503 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 390 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 288 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 289 bp overlap

PPARA::RXRA 1 dataset

Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap

PROP1 1 dataset

Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap

Pax7 1 dataset

Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap

Prdm4 1 dataset

Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap

RAD21 3 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 503 bp overlap

ChIP HAP1 GSE152721.RAD21.HAP1 362 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 503 bp overlap

RARA 1 dataset

Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap

RARA::RXRG 1 dataset

Motif DE_12h DE_12h-RARARXRG_MA1149.2 17 bp overlap

RHOXF1 1 dataset

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

SAP30 1 dataset

ChIP WA01 ENCSR000ATR.SAP30.WA01 172 bp overlap

SIN3A 2 datasets

ChIP WA01 ENCSR000BIS.SIN3A.WA01 100 bp overlap

ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap

SMARCA4 2 datasets

ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 171 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 251 bp overlap

TBP 4 datasets

ChIP hESC GSE122298.TBP.hESC 196 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 149 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 95 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 297 bp overlap

TCF12 1 dataset

ChIP K562 ENCFF931DJY 336 bp overlap

TFAP4::ETV1 1 dataset

Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap

TRIM28 1 dataset

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 278 bp overlap

ZBTB17 1 dataset

Motif DE_12h DE_12h-ZBTB17_MA2102.1 8 bp overlap

ZNF143 1 dataset

Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap

ZNF652 1 dataset

Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap