chr19 : 38,754,913 38,755,455
542 bp 12 TFs 12 linked genes
This 542 bp open chromatin element is linked to 12 target genes and is bound by 12 transcription factors.
Linked Genes
12 genes
Gene Expression Dist. to TSS Distance Link type
CAPN12 11.0 kb Distal Multiome
ECH1 76.6 kb Distal Multiome
HNRNPL 97.1 kb Distal Multiome
ACTN4 107.6 kb Distal Multiome
EIF3K 136.0 kb Distal Multiome
MAP4K1 136.3 kb Distal Multiome
SIRT2 144.5 kb Distal Multiome
NFKBIB 144.8 kb Distal Multiome
SARS2 175.5 kb Distal Multiome
MRPS12 175.7 kb Distal Multiome
FBXO17 220.5 kb Distal Multiome
FBXO27 277.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:38,749,913 – 38,760,455
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 407 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 525 bp overlap
ChIP DE DE-FOXA2-2 497 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 515 bp overlap
ChIP DE DE-GATA4-2 524 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 519 bp overlap
ChIP DE DE-GATA6-2 542 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 525 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 483 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 542 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 509 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 367 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 411 bp overlap
MLLT1 1 dataset
ChIP K562 ENCFF074XRJ 89 bp overlap
NR2F1 1 dataset
ChIP K562 ENCFF221HJH 327 bp overlap
SETDB1 1 dataset
ChIP HEK293 ENCFF676PLV 402 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 292 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 542 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 511 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 542 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 200 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 542 bp overlap
ZNF79 1 dataset
ChIP K562 ENCFF558WWN 144 bp overlap