MRPS12
mitochondrial ribosomal protein S12 | RPS12, RPSM12, uS12m, RPMS12

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S12P family. The encoded protein is a key component of the ribosomal small subunit and controls the decoding fidelity and susceptibility to aminoglycoside antibiotics. The gene for mitochondrial seryl-tRNA synthetase is located upstream and adjacent to this gene, and both genes are possible candidates for the autosomal dominant deafness gene (DFNA4). Splice variants that differ in the 5' UTR have been found for this gene; all three variants encode the same protein. [provided by RefSeq, Jul 2008]

Member of: DE-1 DE-1.27 Developmental clusters: GC4
Biological processes 21 terms
Expression (TPM)
MRPS12 — as a Regulated Gene

TFs regulating MRPS12 0 TFs

Transcription factors with Perturb-seq knockdown data for MRPS12. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = MRPS12 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to MRPS12

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of MRPS12, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr19:38,402,504–38,403,738 527.9 kb Distal (>10kb) Multiome HiCAR 940
chr19:38,506,710–38,507,745 423.7 kb Distal (>10kb) Multiome HiCAR 369
chr19:38,514,956–38,515,568 415.7 kb Distal (>10kb) Multiome HiCAR 404
chr19:38,647,137–38,648,653 283.4 kb Distal (>10kb) Multiome 856
chr19:38,666,103–38,666,668 264.7 kb Distal (>10kb) Multiome 317
chr19:38,683,677–38,684,144 247.3 kb Distal (>10kb) Multiome 678
chr19:38,734,491–38,735,702 195.6 kb Distal (>10kb) Multiome 338
chr19:38,735,981–38,737,634 193.9 kb Distal (>10kb) Multiome 493
chr19:38,754,913–38,755,455 175.7 kb Distal (>10kb) Multiome 12
chr19:38,831,191–38,832,119 99.1 kb Distal (>10kb) Multiome 931
chr19:38,849,166–38,852,789 78.9 kb Distal (>10kb) Multiome 1139
chr19:38,869,729–38,870,536 60.9 kb Distal (>10kb) Multiome 350
chr19:38,899,267–38,900,530 31.1 kb Distal (>10kb) Multiome 886
chr19:38,930,044–38,931,363 204 bp At TSS Multiome 889
chr19:38,949,549–38,950,582 19.0 kb Distal (>10kb) Multiome 330
chr19:38,975,192–38,976,859 45.8 kb Distal (>10kb) Multiome 846
chr19:38,995,916–38,996,388 65.2 kb Distal (>10kb) Multiome 144
chr19:39,030,958–39,033,042 100.7 kb Distal (>10kb) Multiome 763
chr19:39,125,485–39,126,290 194.8 kb Distal (>10kb) Multiome 866

Genome Browser

Genomic view of the MRPS12 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr19:38,392,504 – 39,136,290
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq