chr19:6,470,903–6,471,589

chr19 : 6,470,903 – 6,471,589

686 bp 26 TFs 16 linked genes

This 686 bp open chromatin element is linked to 16 target genes and is bound by 26 transcription factors.

Linked Genes

16 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000275234		1.4 kb	Proximal	Proximity
DENND1C		4.6 kb	Proximal	Proximity
CRB3		6.6 kb	Proximal	Proximity
SLC25A23		11.5 kb	Distal	Multiome
KHSRP		46.4 kb	Distal	Multiome
GTF2F1		78.1 kb	Distal	Multiome
ALKBH7		98.5 kb	Distal	Multiome
CLPP		109.7 kb	Distal	Multiome
CD70		119.9 kb	Distal	Multiome
MLLT1		191.3 kb	Distal	Multiome
TNFSF14		198.9 kb	Distal	Multiome
C3		259.3 kb	Distal	Multiome
GPR108		266.3 kb	Distal	Multiome
TRIP10		268.5 kb	Distal	Multiome
RFX2		271.7 kb	Distal	Multiome
SH2D3A		296.2 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

26 transcription factors

CSNK2A1 1 dataset

ChIP LNCaP_DHT GSE58607.CSNK2A1.LNCaP_DHT 210 bp overlap

CTCF 8 datasets

ChIP BC-3 GSE135740.CTCF.BC-3 179 bp overlap

ChIP K-562 ENCSR000BPJ.CTCF.K-562 115 bp overlap

ChIP K-562 GSE70764.CTCF.K-562 163 bp overlap

ChIP K-562 ENCSR000DMA.CTCF.K-562 108 bp overlap

ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 153 bp overlap

ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 81 bp overlap

ChIP K562 ENCFF082GOI 185 bp overlap

ChIP K562 ENCFF111MGE 245 bp overlap

Cebpa 3 datasets

ChIP BLaER1 ENCFF031ISE 251 bp overlap

ChIP BLaER1 ENCFF093OYK 198 bp overlap

ChIP BLaER1 ENCFF364PUR 294 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 261 bp overlap

ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 341 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-1 466 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 565 bp overlap

ChIP DE DE-GATA4-2 601 bp overlap

ChIP foregut GSE117136.GATA4.foregut 585 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 600 bp overlap

ChIP DE DE-GATA6-2 633 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 510 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 585 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 426 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 513 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 590 bp overlap

ChIP foregut GSE117136.GATA6.foregut 524 bp overlap

ChIP K-562 ENCSR197ALX.HDGF.K-562 319 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 157 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 242 bp overlap

ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 159 bp overlap

NANOG 2 datasets

ChIP WA01 ENCSR000BMT.NANOG.WA01 83 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 230 bp overlap

ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 201 bp overlap

POLR2A 1 dataset

ChIP spleen ENCFF706IUS 249 bp overlap

RAD21 2 datasets

ChIP K-562 ENCSR000BKV.RAD21.K-562 127 bp overlap

ChIP K562 ENCFF169SQI 171 bp overlap

ChIP K-562 ENCSR137ZMQ.REST.K-562 239 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 434 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 251 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 495 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 612 bp overlap

SUPT5H 2 datasets

ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 491 bp overlap

ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 330 bp overlap

SUPT6H 1 dataset

ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 322 bp overlap

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 182 bp overlap

TRIM28 1 dataset

ChIP K-562 ENCSR474CVP.TRIM28.K-562 239 bp overlap

ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 297 bp overlap

ZNF320 1 dataset

ChIP HEK293 GSE76494.ZNF320.HEK293 247 bp overlap

ZNF891 1 dataset

ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 176 bp overlap