chr17:28,321,010–28,321,937

chr17 : 28,321,010 – 28,321,937

927 bp 25 TFs 11 linked genes

This 927 bp open chromatin element is linked to 11 target genes and is bound by 25 transcription factors.

Linked Genes

11 genes

Gene	Expression	Dist. to TSS	Distance	Link type
TMEM97		1.8 kb	Proximal	Proximity
IFT20		14.0 kb	Distal	Multiome
TNFAIP1		14.3 kb	Distal	Multiome
POLDIP2		36.1 kb	Distal	Multiome
TMEM199		36.2 kb	Distal	Multiome
UNC119		231.2 kb	Distal	Multiome
PIGS		250.1 kb	Distal	Multiome
ALDOC		255.5 kb	Distal	Multiome
SPAG5		277.6 kb	Distal	Multiome
NLK		279.7 kb	Distal	Multiome
RSKR		292.8 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

25 transcription factors

ARHGAP35 1 dataset

ChIP K562 ENCFF198TWI 261 bp overlap

CTCF 111 datasets

ChIP 22Rv1 ENCFF466OXN 172 bp overlap

ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 57 bp overlap

ChIP A-549 ENCSR000AUF.CTCF.A-549 79 bp overlap

ChIP A-549 ENCSR000DPF.CTCF.A-549 59 bp overlap

ChIP A-673 ENCSR611JJS.CTCF.A-673 99 bp overlap

ChIP A549 ENCFF669BWC 58 bp overlap

ChIP B cell ENCFF506FKC 78 bp overlap

ChIP BJ ENCSR000DQI.CTCF.BJ 132 bp overlap

ChIP C4-2B ENCFF821XVN 152 bp overlap

ChIP DOHH2 ENCFF637WNW 75 bp overlap

ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 173 bp overlap

ChIP GM04604 GSE148179.CTCF.GM04604 149 bp overlap

ChIP GM04648 GSE148179.CTCF.GM04648 149 bp overlap

ChIP GM12873 ENCSR000DRP.CTCF.GM12873 70 bp overlap

ChIP GM23338 ENCFF531QOI 59 bp overlap

ChIP GM23338 ENCFF832KWE 90 bp overlap

ChIP GP5D GSE51234.CTCF.GP5D 132 bp overlap

ChIP HAP1_SCC4KO GSE94992.CTCF.HAP1_SCC4KO 92 bp overlap

ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 87 bp overlap

ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 195 bp overlap

ChIP HFFc6 ENCFF005CJI 57 bp overlap

ChIP HT-1080 GSE135580.CTCF.HT-1080 534 bp overlap

ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 90 bp overlap

ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 60 bp overlap

ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 201 bp overlap

ChIP ID00016 GSE76922.CTCF.ID00016 50 bp overlap

ChIP KMS-11 ENCFF853JKX 116 bp overlap

ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 125 bp overlap

ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 75 bp overlap

ChIP Loucy ENCSR464DKE.CTCF.Loucy 152 bp overlap

ChIP MCF-10A GSE98551.CTCF.MCF-10A 78 bp overlap

ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 53 bp overlap

ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 165 bp overlap

ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 111 bp overlap

ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 131 bp overlap

ChIP OCI-LY1 ENCFF455ESK 79 bp overlap

ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 58 bp overlap

ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 70 bp overlap

ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 50 bp overlap

ChIP PC-3 ENCSR359LOD.CTCF.PC-3 73 bp overlap

ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 142 bp overlap

ChIP RWPE1 ENCFF200GQF 116 bp overlap

ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 100 bp overlap

ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 93 bp overlap

ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 95 bp overlap

ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 80 bp overlap

ChIP SU-DHL-6 ENCFF116KKR 70 bp overlap

ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 55 bp overlap

ChIP VCaP ENCFF858YQT 101 bp overlap

ChIP VCaP ENCFF858YQT 101 bp overlap

ChIP VCaP ENCSR265ARE.CTCF.VCaP 124 bp overlap

ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 143 bp overlap

ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 68 bp overlap

ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 116 bp overlap

ChIP brain ENCFF099ASU 86 bp overlap

ChIP chondrocyte ENCFF134ORZ 81 bp overlap

ChIP chondrocyte ENCFF134ORZ 81 bp overlap

ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 86 bp overlap

ChIP colon_sigmoid ENCSR721AHD.CTCF.colon_sigmoid 115 bp overlap

ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 71 bp overlap

ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 62 bp overlap

ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 156 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 125 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 143 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF092NXX 60 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF265AZL 50 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF327VLN 74 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF359BHR 61 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF403LNW 81 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF406ZHG 80 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF595WAL 53 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF604JAV 58 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF677SUG 50 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF696JOF 69 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF749FBO 64 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF812HQJ 58 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 61 bp overlap

ChIP endothelial cell ENCFF663LIE 135 bp overlap

ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 97 bp overlap

ChIP epithelial_mammary ENCSR000ALV.CTCF.epithelial_mammary 55 bp overlap

ChIP esophagus muscularis mucosa ENCFF045JBW 51 bp overlap

ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 83 bp overlap

ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 94 bp overlap

ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 111 bp overlap

ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 69 bp overlap

ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 78 bp overlap

ChIP glutamatergic neuron ENCFF816BTR 113 bp overlap

ChIP heart left ventricle ENCFF888ERQ 63 bp overlap

ChIP keratinocyte GSE154221.CTCF.keratinocyte 178 bp overlap

ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 111 bp overlap

ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 102 bp overlap

ChIP lower lobe of left lung ENCFF906NCV 53 bp overlap

ChIP lung_left_upper-lobe ENCSR964BKO.CTCF.lung_left_upper-lobe 57 bp overlap

ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 141 bp overlap

ChIP mesothelial cell of epicardium ENCFF427RFE 52 bp overlap

ChIP nephron ENCFF411ACD 100 bp overlap

ChIP nephron ENCFF972IQB 52 bp overlap

ChIP nephron progenitor cell ENCFF455DMI 57 bp overlap

ChIP neural progenitor cell ENCFF581WPG 57 bp overlap

ChIP osteoblast ENCSR000APF.CTCF.osteoblast 76 bp overlap

ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 180 bp overlap

ChIP pancreas_body ENCSR307PFP.CTCF.pancreas_body 176 bp overlap

ChIP placenta ENCFF029PHY 80 bp overlap

ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 72 bp overlap

ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 365 bp overlap

ChIP stomach ENCFF918GTC 66 bp overlap

ChIP thyroid gland ENCFF300RYK 50 bp overlap

ChIP tibial artery ENCFF279CMY 50 bp overlap

ChIP transverse colon ENCFF077CMZ 65 bp overlap

ChIP transverse colon ENCFF749DPF 71 bp overlap

ChIP upper lobe of left lung ENCFF374MAK 77 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF262VBH 313 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 206 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 609 bp overlap

ChIP DE DE-FOXA2-2 815 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 628 bp overlap

ChIP DE DE-GATA4-2 758 bp overlap

GATA6 3 datasets

ChIP DE DE-GATA6-1 626 bp overlap

ChIP DE DE-GATA6-2 755 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 353 bp overlap

HDGF 2 datasets

ChIP GM12878 ENCFF653WYI 383 bp overlap

ChIP K-562 ENCSR197ALX.HDGF.K-562 205 bp overlap

ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 131 bp overlap

MYOD1 1 dataset

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 148 bp overlap

NEUROD1 1 dataset

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 271 bp overlap

RAD21 1 dataset

ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 65 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 474 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 254 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 581 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 786 bp overlap

SREBP2 1 dataset

ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 308 bp overlap

STAT1_pS727 1 dataset

ChIP SET-2 GSE100566.STAT1_pS727.SET-2 106 bp overlap

TARDBP 1 dataset

ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 137 bp overlap

ZNF317 1 dataset

ChIP HepG2 ENCFF018ISP 122 bp overlap

ZNF322 1 dataset

ChIP HEK293 GSE76494.ZNF322.HEK293 143 bp overlap

ZNF335 2 datasets

ChIP HEK293 ENCFF784SLD 245 bp overlap

ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 244 bp overlap

ZNF394 1 dataset

ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 243 bp overlap

ZNF865 1 dataset

ChIP HepG2 ENCFF472KAQ 347 bp overlap

ZSCAN4 2 datasets

ChIP HEK293 ENCFF381BKT 297 bp overlap

ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 290 bp overlap