chr1 : 241,994,890 – 241,995,691

801 bp 54 TFs 1 linked gene

This 801 bp open chromatin element is linked to MAP1LC3C and is bound by 54 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
MAP1LC3C		3.4 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

54 transcription factors

Ahr::Arnt 1 dataset

Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap

BCL11A 1 dataset

ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 68 bp overlap

BRD4 1 dataset

ChIP CHL-1 GSE95585.BRD4.CHL-1 670 bp overlap

DMRTA1 1 dataset

Motif DE_60h DE_60h-DMRTA1_MA1707.2 10 bp overlap

DMRTA2 1 dataset

Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap

EGR2 1 dataset

ChIP HEK293 ENCFF336LFH 329 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 190 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-1 527 bp overlap

GATA2 1 dataset

Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 630 bp overlap

ChIP DE DE-GATA4-2 637 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

GATA5 1 dataset

Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-1 621 bp overlap

ChIP DE DE-GATA6-2 548 bp overlap

Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 373 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 626 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 450 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 704 bp overlap

GLIS3 1 dataset

Motif DE_60h DE_60h-GLIS3_MA0737.1 14 bp overlap

Gata3 1 dataset

Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap

HAND2 1 dataset

Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap

HOXA3 1 dataset

Motif DE_60h DE_60h-HOXA3_MA2119.1 7 bp overlap

HOXA4 1 dataset

Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap

HOXA5 1 dataset

Motif DE_60h DE_60h-HOXA5_MA0158.2 8 bp overlap

HOXB4 1 dataset

Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap

HOXD3 1 dataset

Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap

HOXD4 1 dataset

Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap

IKZF1 1 dataset

ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 315 bp overlap

MEIS1 1 dataset

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

MYBL1 1 dataset

Motif DE_60h DE_60h-MYBL1_MA0776.1 12 bp overlap

MYF6 1 dataset

Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap

OSR1 1 dataset

Motif DE_60h DE_60h-OSR1_MA1542.2 8 bp overlap

RUNX2 1 dataset

ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 330 bp overlap

RXRA::VDR 1 dataset

Motif DE_60h DE_60h-RXRAVDR_MA0074.1 15 bp overlap

SOX13 2 datasets

Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap

SOX14 1 dataset

Motif DE_60h DE_60h-SOX14_MA1562.2 9 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 218 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 430 bp overlap

SOX2 2 datasets

Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap

SOX4 1 dataset

Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap

SOX8 1 dataset

Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap

SOX9 1 dataset

Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap

Sox11 1 dataset

Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap

Sox17 1 dataset

Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap

Sox3 2 datasets

Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap

Sox5 1 dataset

Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap

Sox6 1 dataset

Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap

Sox7 1 dataset

Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap

TRPS1 1 dataset

Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap

TWIST1 3 datasets

ChIP BE2C GSE80151.TWIST1.BE2C 147 bp overlap

Motif DE_60h DE_60h-TWIST1_MA1123.3 8 bp overlap

ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 147 bp overlap

ZBTB26 1 dataset

Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap

ZBTB7B 1 dataset

Motif DE_60h DE_60h-ZBTB7B_MA0694.2 10 bp overlap

ZBTB8A 1 dataset

ChIP HEK293 ENCFF303WRD 490 bp overlap

ZFHX2 1 dataset

ChIP HEK293 ENCFF167TUA 331 bp overlap

ZIC4 1 dataset

Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap

ZNF479 1 dataset

ChIP HEK293T GSE78099.ZNF479.HEK293T 85 bp overlap

ZNF528 1 dataset

Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap

ZNF677 1 dataset

Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap

ZNF768 1 dataset

Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap