chr16 : 54,199,531 54,200,186
655 bp 43 TFs 2 linked genes
This 655 bp open chromatin element is linked to IRX3 and CRNDE and is bound by 43 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
IRX3 87.0 kb Distal Multiome
CRNDE 729.4 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:54,194,531 – 54,205,186
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 179 bp overlap
CEBPB 2 datasets
ChIP Hep-G2 ENCSR000BQI.CEBPB.Hep-G2 93 bp overlap
ChIP HepG2 ENCFF074JWB 140 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 374 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 239 bp overlap
ESR1 1 dataset
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 169 bp overlap
ESRRA 4 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 178 bp overlap
ChIP HepG2 ENCFF033DVS 271 bp overlap
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 174 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 130 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 655 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 198 bp overlap
EZH2 2 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 275 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 329 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 284 bp overlap
ChIP DE DE-FOXA2-2 311 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 520 bp overlap
ChIP DE DE-GATA4-2 641 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 576 bp overlap
ChIP DE DE-GATA6-2 655 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 524 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 568 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 525 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 655 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 601 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 562 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 555 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 269 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 323 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 177 bp overlap
MAX 2 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 207 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 119 bp overlap
MGA 2 datasets
ChIP HepG2 ENCFF057YJE 377 bp overlap
ChIP HepG2 ENCFF057YJE 112 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 235 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 288 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 215 bp overlap
NFIB 2 datasets
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 67 bp overlap
ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 53 bp overlap
NFIC 1 dataset
ChIP Hep-G2 GSE108514.NFIC.Hep-G2 136 bp overlap
NR5A1 2 datasets
ChIP Hep-G2 ENCSR310OZS.NR5A1.Hep-G2 187 bp overlap
ChIP HepG2 ENCFF970YZO 244 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 347 bp overlap
ONECUT1 2 datasets
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 178 bp overlap
ChIP HepG2 ENCFF243FIR 140 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 362 bp overlap
PRPF4 2 datasets
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 223 bp overlap
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 221 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 493 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 569 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 339 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 450 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 320 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 494 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 628 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 162 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 380 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 572 bp overlap
SOX6 1 dataset
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 149 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 72 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 214 bp overlap
TGIF2 1 dataset
ChIP Hep-G2 ENCSR993LMB.TGIF2.Hep-G2 123 bp overlap
ZBTB33 1 dataset
ChIP HepG2 ENCFF778UKV 327 bp overlap
ZNF48 1 dataset
ChIP HepG2 ENCFF362CDQ 55 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 184 bp overlap