chr16 : 28,267,361 28,267,924
563 bp 36 TFs 5 linked genes
This 563 bp open chromatin element is linked to 5 target genes and is bound by 36 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
ENSG00000283662 8.7 kb Proximal Proximity
SBK1 24.9 kb Distal Multiome
XPO6 55.6 kb Distal Multiome
CLN3 224.4 kb Distal Multiome
SGF29 286.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:28,262,361 – 28,272,924
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 169 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 228 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 211 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 535 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 246 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 467 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 563 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 515 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 563 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 551 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 67 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 257 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 508 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 165 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 212 bp overlap
EZH2 1 dataset
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 178 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 563 bp overlap
ChIP DE DE-FOXA2-2 444 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 521 bp overlap
ChIP DE DE-GATA4-2 563 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 283 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 483 bp overlap
ChIP DE DE-GATA6-2 563 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 512 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 492 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 391 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000FAE.MAX.K-562 110 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 529 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 506 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 562 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 536 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 563 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 176 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 238 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 127 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 454 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 556 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 277 bp overlap
PRDM1 1 dataset
ChIP HEK293 GSE76494.PRDM1.HEK293 116 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 563 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 281 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 509 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 475 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 445 bp overlap
SMARCC1 1 dataset
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 201 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 355 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 563 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 454 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 165 bp overlap
USF1 1 dataset
ChIP K-562 ENCSR000BKT.USF1.K-562 150 bp overlap
XRCC5 2 datasets
ChIP K-562 GSE120104.XRCC5.K-562 259 bp overlap
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 257 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 246 bp overlap