chr15 : 81,433,265 – 81,433,813
548 bp 46 TFs 3 linked genes
This 548 bp open chromatin element is linked to ENSG00000259543, TMC3-AS1, and CFAP161 and is bound by 46 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000259543 5.8 kb Proximal Proximity
TMC3-AS1 109.3 kb Distal Multiome
CFAP161 299.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:81,428,265 – 81,438,813
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
BCL6 1 dataset
Motif DE_48h DE_48h-BCL6_MA0463.3 13 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 263 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 81 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 265 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 53 bp overlap
ESR1 4 datasets
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 166 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 115 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 301 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 385 bp overlap
FOXA1 9 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 253 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 152 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 170 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 216 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 148 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 380 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 260 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 222 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 305 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 548 bp overlap
ChIP DE DE-FOXA2-2 548 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 187 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 178 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 517 bp overlap
ChIP DE DE-GATA4-2 548 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 488 bp overlap
ChIP DE DE-GATA6-2 548 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 221 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 201 bp overlap
HOXA10 1 dataset
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
HOXD9 1 dataset
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_48h DE_48h-Hand1Tcf3_MA0092.2 9 bp overlap
ISL2 1 dataset
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
Isl1 1 dataset
Motif DE_48h DE_48h-Isl1_MA1608.2 7 bp overlap
Lef1 1 dataset
Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MYCN 1 dataset
ChIP BE2C GSE80151.MYCN.BE2C 179 bp overlap
Mecom 1 dataset
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 284 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 174 bp overlap
NFKB2 2 datasets
ChIP L1236 GSE63736.NFKB2.L1236 67 bp overlap
ChIP L1236 GSE63736.NFKB2.L1236 206 bp overlap
NKX6-3 1 dataset
Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap
Nkx3-2 1 dataset
Motif DE_48h DE_48h-Nkx3-2_MA0122.4 10 bp overlap
Nr2e1 3 datasets
Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap
Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap
Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap
RELB 1 dataset
ChIP L1236 GSE63736.RELB.L1236 171 bp overlap
SMAD2 2 datasets
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 301 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 548 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 443 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 491 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 442 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 394 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 345 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 439 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 432 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 231 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 318 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 286 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 412 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 152 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 349 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 493 bp overlap
SOX2 2 datasets
ChIP HCC95 GSE137459.SOX2.HCC95 379 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 291 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_48h DE_48h-Stat5aStat5b_MA0519.2 9 bp overlap
Stat6 1 dataset
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
TFAP2A 1 dataset
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 201 bp overlap
TP53 26 datasets
ChIP GM06170 GSE55727.TP53.GM06170 124 bp overlap
ChIP H9 GSE142050.TP53.H9 393 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 168 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 373 bp overlap
ChIP HCT-116_5FU GSE58506.TP53.HCT-116_5FU 138 bp overlap
ChIP HCT-116_DMSO_KOATF3 GSE74355.TP53.HCT-116_DMSO_KOATF3 86 bp overlap
ChIP HCT-116_Nutlin3a-SC GSE125927.TP53.HCT-116_Nutlin3a-SC 67 bp overlap
ChIP HCT-116_nutlin GSE86164.TP53.HCT-116_nutlin 329 bp overlap
ChIP HCT-116_siGLIS2-1-5FU GSE125927.TP53.HCT-116_siGLIS2-1-5FU 183 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 247 bp overlap
ChIP MCF-7_2-5h_IR_10Gy GSE100099.TP53.MCF-7_2-5h_IR_10Gy 130 bp overlap
ChIP MCF-7_7-5h_IR_10Gy GSE100099.TP53.MCF-7_7-5h_IR_10Gy 162 bp overlap
ChIP MCF-7_7-5h_IR_10Gy_Nutlin GSE100099.TP53.MCF-7_7-5h_IR_10Gy_Nutlin 346 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 526 bp overlap
ChIP MOLM-13_R282W_DMSO GSE131484.TP53.MOLM-13_R282W_DMSO 72 bp overlap
ChIP MOLM-13_R282W_Daunorubicin GSE131484.TP53.MOLM-13_R282W_Daunorubicin 140 bp overlap
ChIP SJSA-1_nutlin GSE86164.TP53.SJSA-1_nutlin 298 bp overlap
ChIP U2OS_DMSO GSE46641.TP53.U2OS_DMSO 112 bp overlap
ChIP U2OS_DXR GSE46641.TP53.U2OS_DXR 59 bp overlap
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 341 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 301 bp overlap
ChIP keratinocyte GSE56674.TP53.keratinocyte 51 bp overlap
ChIP keratinocyte_ADRIA GSE56674.TP53.keratinocyte_ADRIA 85 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 112 bp overlap
ChIP lymphocyte_116_Nutlin GSE110368.TP53.lymphocyte_116_Nutlin 72 bp overlap
ChIP lymphocyte_90_Nutlin GSE110368.TP53.lymphocyte_90_Nutlin 127 bp overlap
TP63 10 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 105 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 159 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 300 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 227 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 66 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 77 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 153 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 130 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 61 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 126 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 154 bp overlap
ZNF76 1 dataset
Motif DE_48h DE_48h-ZNF76_MA1716.2 17 bp overlap
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