chr1 : 233,241,496 – 233,241,639
143 bp 35 TFs 0 linked genes
This 143 bp open chromatin element has no linked target genes and is bound by 35 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:233,236,496 – 233,246,639
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP HEK293T GSE39579.BRD4.HEK293T 143 bp overlap
CTCF 94 datasets
ChIP 22Rv1 ENCFF466OXN 115 bp overlap
ChIP 22Rv1 ENCFF466OXN 125 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 92 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 97 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 53 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 143 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 143 bp overlap
ChIP B cell ENCFF500PZO 115 bp overlap
ChIP C4-2B ENCFF821XVN 143 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 143 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 81 bp overlap
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 61 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 143 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 82 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 74 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 81 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 143 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 122 bp overlap
ChIP KMS-11 ENCFF853JKX 143 bp overlap
ChIP LNCAP ENCFF223HIG 61 bp overlap
ChIP LNCAP ENCFF700QXT 54 bp overlap
ChIP LNCAP ENCFF700QXT 57 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 73 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 121 bp overlap
ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 66 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 84 bp overlap
ChIP NPC GSE115407.CTCF.NPC 103 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 62 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 97 bp overlap
ChIP Panc1 ENCFF056JQX 143 bp overlap
ChIP RWPE-1 ENCSR303GFI.CTCF.RWPE-1 71 bp overlap
ChIP RWPE1 ENCFF200GQF 51 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 128 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 63 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 143 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 143 bp overlap
ChIP T-47D_NaCl-1h GSE111923.CTCF.T-47D_NaCl-1h 80 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 141 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 56 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 106 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 63 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 59 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 62 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 53 bp overlap
ChIP VCaP ENCFF858YQT 143 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 143 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 83 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 92 bp overlap
ChIP brain ENCFF685VRG 53 bp overlap
ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 76 bp overlap
ChIP chondrocyte ENCFF134ORZ 99 bp overlap
ChIP chondrocyte ENCFF134ORZ 119 bp overlap
ChIP colon_sigmoid ENCSR721AHD.CTCF.colon_sigmoid 92 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 55 bp overlap
ChIP colon_transverse ENCSR236YGF.CTCF.colon_transverse 89 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 76 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 117 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 143 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 77 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 143 bp overlap
ChIP endothelial cell ENCFF663LIE 101 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 143 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 117 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR353DFU.CTCF.esophagus_muscularis-mucosa 60 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 70 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 54 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 95 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 143 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 143 bp overlap
ChIP hESC_D80 GSE116862.CTCF.hESC_D80 96 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 143 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 115 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 103 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 53 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 61 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 143 bp overlap
ChIP neural cell ENCFF335ADI 54 bp overlap
ChIP neuron GSE115407.CTCF.neuron 143 bp overlap
ChIP neutrophil ENCSR785YRL.CTCF.neutrophil 143 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 108 bp overlap
ChIP pancreas_body ENCSR572DUJ.CTCF.pancreas_body 105 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 143 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 143 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 105 bp overlap
ChIP prostate gland ENCFF193LJV 143 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 106 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 98 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 72 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 84 bp overlap
ChIP sigmoid colon ENCFF219LPW 143 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 143 bp overlap
ChIP spleen ENCSR601FEB.CTCF.spleen 143 bp overlap
ChIP suprapubic skin ENCFF266CTJ 143 bp overlap
ChIP tibial nerve ENCFF420SAZ 143 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_72h DE_72h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 111 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 143 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 143 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 143 bp overlap
ChIP DE DE-GATA4-2 143 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 143 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 143 bp overlap
GATA6 5 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 115 bp overlap
ChIP DE DE-GATA6-2 92 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 143 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 143 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 143 bp overlap
HAND2 1 dataset
Motif DE_72h DE_72h-HAND2_MA1638.2 6 bp overlap
KDM2A 1 dataset
ChIP HepG2 ENCFF491GTR 77 bp overlap
NFIA 1 dataset
Motif DE_72h DE_72h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_72h DE_72h-NFIX_MA0671.2 6 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 143 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 143 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 110 bp overlap
RAD21 13 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 143 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 137 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 143 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 143 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 143 bp overlap
ChIP T-47D_triptolide GSE111923.RAD21.T-47D_triptolide 143 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 72 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-045m-Flavo-000m 143 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 125 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 78 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 143 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 55 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 143 bp overlap
SMARCC1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 143 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 54 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 143 bp overlap
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 143 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 143 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 58 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 58 bp overlap
TFAP4::ETV1 1 dataset
Motif DE_72h DE_72h-TFAP4ETV1_MA1966.2 13 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 143 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 87 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 143 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCFF968PWB 141 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 143 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 143 bp overlap
ZNF418 1 dataset
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF524 1 dataset
ChIP HEK293 ENCSR418NZA.ZNF524.HEK293 70 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 119 bp overlap
ZNF610 1 dataset
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 143 bp overlap
ZNF654 1 dataset
ChIP HEK293 ENCSR504VDV.ZNF654.HEK293 62 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 61 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 143 bp overlap
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