chr13 : 99,205,591 – 99,206,316
725 bp 41 TFs 3 linked genes
This 725 bp open chromatin element is linked to RN7SKP9, UBAC2, and UBAC2-AS1 and is bound by 41 transcription factors.
Linked Genes
3 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RN7SKP9 at TSS At TSS Proximity
UBAC2 4.7 kb Proximal Proximity
UBAC2-AS1 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:99,200,591 – 99,211,316
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
Bach1::Mafk 1 dataset
Motif DE_72h DE_72h-Bach1Mafk_MA0591.2 12 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDX2 2 datasets
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
Motif DE_72h DE_72h-CDX2_MA0465.3 8 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF274GAT 502 bp overlap
ChIP BLaER1 ENCFF364PUR 364 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DMRTC2 2 datasets
Motif DE_60h DE_60h-DMRTC2_MA1479.2 11 bp overlap
Motif DE_72h DE_72h-DMRTC2_MA1479.2 11 bp overlap
DUX4 2 datasets
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
Dux 2 datasets
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
ESR1 1 dataset
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 217 bp overlap
FOXA1 28 datasets
ChIP MCF-7 ERP001226.FOXA1.MCF-7 134 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 133 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 123 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 221 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 235 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 274 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 238 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 209 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 314 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 231 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 226 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 156 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 158 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 180 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 146 bp overlap
ChIP breast-cancer_Herceptin-ICI GSE101407.FOXA1.breast-cancer_Herceptin-ICI 496 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 689 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 683 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 143 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 313 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 293 bp overlap
ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 500 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 299 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 667 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 311 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 96 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 344 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 292 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 674 bp overlap
ChIP DE DE-FOXA2-2 709 bp overlap
ChIP HepG2 ENCFF570ABM 405 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 205 bp overlap
FOXB1 2 datasets
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXC1 2 datasets
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXC2 2 datasets
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
Foxj3 2 datasets
Motif DE_60h DE_60h-Foxj3_MA0851.2 9 bp overlap
Motif DE_72h DE_72h-Foxj3_MA0851.2 9 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 403 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 429 bp overlap
ChIP DE DE-GATA4-2 574 bp overlap
ChIP foregut GSE117136.GATA4.foregut 307 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 241 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 556 bp overlap
ChIP DE DE-GATA6-2 662 bp overlap
ChIP foregut GSE117136.GATA6.foregut 300 bp overlap
Hoxa13 2 datasets
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
Motif DE_72h DE_72h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 2 datasets
Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap
Motif DE_72h DE_72h-Hoxd13_MA0909.4 7 bp overlap
MAF 1 dataset
Motif DE_72h DE_72h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_72h DE_72h-MAFA_MA1521.2 13 bp overlap
MAFK 1 dataset
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
Mafg 1 dataset
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
NFYA 2 datasets
Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
NFYC 2 datasets
Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 226 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 72 bp overlap
POLR2A 3 datasets
ChIP HeLa-S3 ENCFF773DNG 262 bp overlap
ChIP HeLa-S3 ENCFF773DNG 60 bp overlap
ChIP spleen ENCFF446ZGT 113 bp overlap
PRDM9 2 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 177 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 677 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 687 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 441 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 364 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 397 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 387 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 400 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 186 bp overlap
SP4 2 datasets
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
STAT3 1 dataset
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 241 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 505 bp overlap
ChIP HEK293 ENCFF865LIO 610 bp overlap
ZNF263 2 datasets
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 177 bp overlap
ZNF784 1 dataset
Motif DE_72h DE_72h-ZNF784_MA1717.2 8 bp overlap
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