chr13 : 59,641,326 – 59,641,538
212 bp 34 TFs 0 linked genes
This 212 bp open chromatin element has no linked target genes and is bound by 34 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:59,636,326 – 59,646,538
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 180 bp overlap
CTCF 153 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 212 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 211 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 171 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 163 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 123 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 156 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 152 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 141 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 83 bp overlap
ChIP GM23338 ENCFF531QOI 212 bp overlap
ChIP GM23338 ENCFF772DML 173 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 137 bp overlap
ChIP GP5D_SIRAD21 GSE51234.CTCF.GP5D_SIRAD21 101 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 209 bp overlap
ChIP H1 ENCFF764RHO 162 bp overlap
ChIP H9 ENCFF152GTF 212 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 212 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 188 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 212 bp overlap
ChIP HAP1_SCC4KO GSE94992.CTCF.HAP1_SCC4KO 156 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 212 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 203 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 199 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 212 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 212 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 212 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 212 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 212 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 212 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 212 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 176 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 183 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 212 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 202 bp overlap
ChIP HCT116 ENCFF209YMI 212 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 118 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 97 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 212 bp overlap
ChIP HFFc6 ENCFF005CJI 212 bp overlap
ChIP HFFc6 ENCFF005CJI 212 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 120 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 205 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 212 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 206 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 167 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 167 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 180 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 158 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 212 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 212 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 124 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 188 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 212 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 190 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 140 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 178 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 120 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 164 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 212 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 189 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 142 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 121 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 114 bp overlap
ChIP HepG2 ENCFF127KUP 195 bp overlap
ChIP HepG2 ENCFF194VBQ 212 bp overlap
ChIP HepG2 ENCFF348BUL 191 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 129 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 141 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 184 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 115 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 130 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 131 bp overlap
ChIP K-562_RF2-mutation GSE140868.CTCF.K-562_RF2-mutation 141 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 126 bp overlap
ChIP K-562_WT GSE140868.CTCF.K-562_WT 180 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 145 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 153 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 212 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 212 bp overlap
ChIP MCF-7 ENCFF139NQI 212 bp overlap
ChIP MCF-7 ENCFF198DQX 210 bp overlap
ChIP MCF-7 ENCFF414SZG 188 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 210 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 198 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 212 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 192 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 177 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 122 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 135 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 109 bp overlap
ChIP MCF-7L_TAMR GSE108787.CTCF.MCF-7L_TAMR 188 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 212 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 192 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 133 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 195 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 169 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 130 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 98 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 212 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 138 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 212 bp overlap
ChIP PC-3 ENCFF487TUI 212 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 212 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 155 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 212 bp overlap
ChIP RWPE2 ENCFF911IEE 212 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 166 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 140 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 157 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 209 bp overlap
ChIP WTC11 ENCFF658QVH 212 bp overlap
ChIP WTC11 ENCFF658QVH 211 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 212 bp overlap
ChIP chondrocyte ENCFF134ORZ 212 bp overlap
ChIP chondrocyte ENCFF134ORZ 194 bp overlap
ChIP endodermal cell ENCFF471YCZ 212 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 137 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 173 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 163 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 147 bp overlap
ChIP hESC GSE20650.CTCF.hESC 124 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 212 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 140 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 206 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 212 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 189 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 181 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 212 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 128 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 200 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 200 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 212 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 146 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 196 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 196 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 212 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 212 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 130 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 145 bp overlap
ChIP myotube ENCFF981UHL 212 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 157 bp overlap
ChIP neural progenitor cell ENCFF420RBO 167 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 212 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 185 bp overlap
ChIP osteocyte ENCFF929FPD 212 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 178 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 132 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 210 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 212 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 212 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 212 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 212 bp overlap
NR1H2::RXRA 1 dataset
Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 212 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
RAD21 15 datasets
ChIP H1 ENCFF698EWO 129 bp overlap
ChIP H1 ENCFF967OJF 210 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 212 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 212 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 212 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 212 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 87 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 212 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 212 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 146 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 149 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 150 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 205 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 212 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 192 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Runx1 2 datasets
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 93 bp overlap
SMC1 2 datasets
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 212 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 140 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 161 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 133 bp overlap
SREBF1 2 datasets
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif ES_0h ES_0h-SREBF1_MA0595.1 10 bp overlap
SREBF2 2 datasets
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Motif ES_0h ES_0h-SREBF2_MA0596.1 10 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 143 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 143 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 151 bp overlap
TFAP2A 3 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0810.2 11 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 144 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 4 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0524.3 11 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 212 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 212 bp overlap
TFAP2E 2 datasets
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
Motif ES_0h ES_0h-TFAP2E_MA1569.2 9 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 130 bp overlap
ZBTB24 2 datasets
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap
ZBTB6 2 datasets
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
Motif ES_0h ES_0h-ZBTB6_MA1581.2 9 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 198 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 157 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Znf423 2 datasets
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap
Motif ES_0h ES_0h-Znf423_MA0116.1 15 bp overlap
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