chr12 : 111,967,710 111,968,344
634 bp 26 TFs 9 linked genes
This 634 bp open chromatin element is linked to 9 target genes and is bound by 26 transcription factors.
Linked Genes
9 genes
Link type
Gene Expression Dist. to TSS Distance Link type
TMEM116 45.1 kb Distal Multiome+HiCAR
ERP29 45.2 kb Distal Multiome+HiCAR
MAPKAPK5 125.9 kb Distal Multiome
MAPKAPK5-AS1 126.1 kb Distal Multiome
NAA25 140.7 kb Distal Multiome
TRAFD1 157.4 kb Distal Multiome
ALDH2 201.2 kb Distal Multiome
ACAD10 282.0 kb Distal Multiome
BRAP 282.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:111,962,710 – 111,973,344
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
26 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 164 bp overlap
AR 5 datasets
ChIP 22Rv1 GSE96652.AR.22Rv1 216 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 156 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 118 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 163 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 295 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 292 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 259 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 154 bp overlap
ESRRA 1 dataset
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 228 bp overlap
ETV6 1 dataset
ChIP Reh_pCCL-ETV6-HA GSE102785.ETV6.Reh_pCCL-ETV6-HA 172 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 617 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 634 bp overlap
ChIP DE DE-FOXA2-2 634 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 634 bp overlap
GABPA 2 datasets
ChIP VCaP GSE49091.GABPA.VCaP 134 bp overlap
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 139 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 634 bp overlap
ChIP DE DE-GATA4-2 634 bp overlap
ChIP foregut GSE117136.GATA4.foregut 389 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 634 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 634 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 634 bp overlap
ChIP DE DE-GATA6-2 634 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 511 bp overlap
ChIP foregut GSE117136.GATA6.foregut 428 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 290 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 634 bp overlap
MAX 1 dataset
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 146 bp overlap
RB1 1 dataset
ChIP MCF-7_siH1.2 GSE98728.RB1.MCF-7_siH1.2 194 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 369 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 634 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 621 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 582 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 317 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 296 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 634 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 612 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 188 bp overlap
TAL1 1 dataset
ChIP ProEs GSE59087.TAL1.ProEs 117 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 481 bp overlap
ZMYND8 1 dataset
ChIP MDA-MB-231 GSE108833.ZMYND8.MDA-MB-231 274 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 258 bp overlap