chr12 : 15,583,735 15,584,227
492 bp 52 TFs 0 linked genes
This 492 bp open chromatin element has no linked target genes and is bound by 52 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:15,578,735 – 15,589,227
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
BATF3 1 dataset
ChIP KK-1_BirA GSE94732.BATF3.KK-1_BirA 204 bp overlap
BHLHE40 5 datasets
ChIP GM12878 ENCFF010ZUU 331 bp overlap
ChIP GM12878 ENCFF521IZR 203 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 435 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 239 bp overlap
ChIP GM12878 ENCSR000DZJ.BHLHE40.GM12878 124 bp overlap
BRD4 3 datasets
ChIP CHL-1_BAY123897 GSE95585.BRD4.CHL-1_BAY123897 210 bp overlap
ChIP DND41_E GSE54379.BRD4.DND41_E 238 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 358 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CDX2 3 datasets
ChIP LS180 GSE31939.CDX2.LS180 152 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 123 bp overlap
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 187 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CTCF 25 datasets
ChIP C4-2B ENCFF821XVN 145 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 67 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 234 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 240 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 93 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 52 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 492 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 124 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 180 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 104 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 117 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 255 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 187 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 159 bp overlap
ChIP Panc1 ENCFF056JQX 68 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 81 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 59 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 74 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 129 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 251 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 77 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 74 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 50 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 268 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 55 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 175 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 164 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 355 bp overlap
FOXM1 1 dataset
ChIP GM12878 ENCFF264DJE 62 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 171 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 171 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 351 bp overlap
ChIP DE DE-GATA4-2 459 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 379 bp overlap
ChIP DE DE-GATA6-2 458 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 298 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 492 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 359 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 492 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 492 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 373 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 299 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 59 bp overlap
HOXB9 1 dataset
Motif DE_12h DE_12h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_12h DE_12h-HOXC10_MA0905.2 9 bp overlap
HOXC11 1 dataset
Motif DE_12h DE_12h-HOXC11_MA0651.3 11 bp overlap
HOXC12 1 dataset
Motif DE_12h DE_12h-HOXC12_MA0906.2 10 bp overlap
HOXC13 1 dataset
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
HOXC9 1 dataset
Motif DE_12h DE_12h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_12h DE_12h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif DE_12h DE_12h-HOXD11_MA0908.2 9 bp overlap
HOXD12 1 dataset
Motif DE_12h DE_12h-HOXD12_MA0873.2 10 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Hoxa11 1 dataset
Motif DE_12h DE_12h-Hoxa11_MA0911.2 9 bp overlap
IRF4 2 datasets
ChIP BC-3 GSE132777.IRF4.BC-3 396 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 263 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 365 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 240 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 334 bp overlap
MXI1 2 datasets
ChIP GM12878 ENCFF666NJR 403 bp overlap
ChIP GM12878 ENCFF666NJR 238 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
NANOG 4 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 120 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 244 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 189 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 186 bp overlap
NFKB1 1 dataset
Motif DE_12h DE_12h-NFKB1_MA0105.4 13 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 125 bp overlap
PBX1 1 dataset
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
RAD21 1 dataset
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 77 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 399 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 287 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 399 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 394 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 150 bp overlap
SOX14 1 dataset
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
SOX8 1 dataset
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 85 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap