chr12 : 14,773,064 – 14,773,253
189 bp 26 TFs 4 linked genes
This 189 bp open chromatin element is linked to 4 target genes and is bound by 26 transcription factors.
Linked Genes
4 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000289909 932 bp At TSS Proximity
H2AJ 1.1 kb Proximal Proximity
H4C16 1.9 kb Proximal Proximity
ENSG00000261324 5.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:14,768,064 – 14,778,253
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
26 transcription factors
Source
Cell type
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 92 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 189 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 189 bp overlap
BRD4 4 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 189 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 189 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 166 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 189 bp overlap
CHD1 1 dataset
ChIP MCF-7 ENCSR360JOC.CHD1.MCF-7 189 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 171 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 170 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOXA1 2 datasets
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 119 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 189 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
Hoxd13 1 dataset
Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap
MAFK 1 dataset
Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEN1 2 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 189 bp overlap
ChIP MCF-7_E2 GSE85317.MEN1.MCF-7_E2 189 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 77 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 189 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 189 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 189 bp overlap
ChIP hESC GSE18292.NANOG.hESC 98 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 127 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 3 datasets
ChIP GM23338 ENCFF333SNB 189 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 189 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 120 bp overlap
Prdm15 1 dataset
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
REL 2 datasets
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
Motif ES_0h ES_0h-REL_MA0101.1 10 bp overlap
SMARCA4 3 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 189 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 101 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 189 bp overlap
SMARCD3 1 dataset
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 165 bp overlap
SOX15 1 dataset
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
TBP 2 datasets
ChIP hESC_10h GSE122298.TBP.hESC_10h 111 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 124 bp overlap
TFAP2C 1 dataset
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
ZBTB40 2 datasets
ChIP GM12878 ENCFF346DYM 140 bp overlap
ChIP GM12878 ENCSR189YYK.ZBTB40.GM12878 50 bp overlap
ZNF75D 1 dataset
Motif ES_0h ES_0h-ZNF75D_MA1601.2 12 bp overlap
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