chr10 : 49,619,764 49,619,958
194 bp 28 TFs 2 linked genes
This 194 bp open chromatin element is linked to CHAT and SLC18A3 and is bound by 28 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CHAT 6.7 kb Proximal Proximity
SLC18A3 9.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:49,614,764 – 49,624,958
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 150 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 194 bp overlap
CTCF 200 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 194 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 194 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 189 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 194 bp overlap
ChIP A673 ENCFF123WOM 194 bp overlap
ChIP BE2C ENCFF757SRF 194 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 194 bp overlap
ChIP Caco-2 ENCFF753NZV 194 bp overlap
ChIP Caco-2 ENCFF934QYS 194 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 156 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 135 bp overlap
ChIP DND-41 ENCFF913MRA 194 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 194 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 194 bp overlap
ChIP DU145 GSE121021.CTCF.DU145 159 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 162 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 188 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 194 bp overlap
ChIP GM06990 ENCFF471OQT 194 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 163 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 133 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 194 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 116 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 99 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 107 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 122 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 150 bp overlap
ChIP GM12872 ENCFF697BYI 194 bp overlap
ChIP GM12873 ENCFF711LOS 194 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 168 bp overlap
ChIP GM23338 ENCFF531QOI 181 bp overlap
ChIP GM23338 ENCFF772DML 183 bp overlap
ChIP GM23338 ENCFF832KWE 194 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 194 bp overlap
ChIP H1 ENCFF764RHO 127 bp overlap
ChIP H9 ENCFF152GTF 194 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 194 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 177 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 194 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 134 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 194 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 190 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 194 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 194 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 154 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 194 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 183 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 193 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 160 bp overlap
ChIP HCT116 ENCFF003KHP 194 bp overlap
ChIP HCT116 ENCFF209YMI 194 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 162 bp overlap
ChIP HEK293 ENCFF498RMM 194 bp overlap
ChIP HEK293 ENCFF821TIC 194 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 194 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 188 bp overlap
ChIP HFF ENCSR000DUM.CTCF.HFF 185 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 176 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 136 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 194 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 119 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCFF626XQK 178 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 194 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 194 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 194 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 194 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 194 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 120 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 175 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 194 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 178 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 167 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 120 bp overlap
ChIP HepG2 ENCFF127KUP 190 bp overlap
ChIP HepG2 ENCFF348BUL 182 bp overlap
ChIP HepG2 ENCFF757EKU 194 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 183 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 194 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 194 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 191 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 194 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 155 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 163 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 142 bp overlap
ChIP K-562 GSE110681.CTCF.K-562 155 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 149 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 158 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 171 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 141 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 162 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 116 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 162 bp overlap
ChIP K-562_15923 GSE131349.CTCF.K-562_15923 121 bp overlap
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 112 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 162 bp overlap
ChIP K-562_8004 GSE131349.CTCF.K-562_8004 113 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 162 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 121 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 194 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 184 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 193 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 183 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 186 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 179 bp overlap
ChIP K-562_sgGal4 GSE132212.CTCF.K-562_sgGal4 179 bp overlap
ChIP K562 ENCFF082GOI 159 bp overlap
ChIP K562 ENCFF111MGE 194 bp overlap
ChIP K562 ENCFF400DFR 194 bp overlap
ChIP K562 ENCFF430KTH 194 bp overlap
ChIP K562 ENCFF598YSU 194 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 194 bp overlap
ChIP Kasumi-1_ctrl GSE121280.CTCF.Kasumi-1_ctrl 172 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 183 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 194 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 171 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 167 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 194 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 194 bp overlap
ChIP MCF-7 ENCFF198DQX 180 bp overlap
ChIP MCF-7 ENCFF210JUZ 194 bp overlap
ChIP MCF-7 ENCFF414SZG 164 bp overlap
ChIP MCF-7 ENCFF424NQR 168 bp overlap
ChIP MCF-7 ENCFF494VXA 180 bp overlap
ChIP MCF-7 ENCFF844STM 168 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 194 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 145 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 106 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 120 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 194 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 194 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 194 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 147 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 194 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 112 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 184 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 151 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 194 bp overlap
ChIP PC-3 ENCFF487TUI 194 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 194 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 194 bp overlap
ChIP RWPE2 ENCFF911IEE 194 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 186 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 110 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 194 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 194 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 194 bp overlap
ChIP TALL-1 GSE115893.CTCF.TALL-1 194 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 120 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 169 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 169 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 181 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 184 bp overlap
ChIP WTC11 ENCFF658QVH 194 bp overlap
ChIP WTC11 ENCFF658QVH 194 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 189 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 142 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 194 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 194 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 131 bp overlap
ChIP endodermal cell ENCFF471YCZ 194 bp overlap
ChIP endothelial cell ENCFF663LIE 194 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 174 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 174 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 140 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 194 bp overlap
ChIP erythroid_Don001 GSE137982.CTCF.erythroid_Don001 131 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 178 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 194 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 96 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 170 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 194 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 194 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 194 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 194 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 194 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 175 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 194 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 191 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 194 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 194 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 192 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 187 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 194 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 123 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 194 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 194 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 132 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 194 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 194 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 177 bp overlap
ChIP neural progenitor cell ENCFF420RBO 183 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 194 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 128 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 194 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 149 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 136 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 194 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 194 bp overlap
ESR1 5 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 175 bp overlap
ChIP MCF-7 GSE119057.ESR1.MCF-7 164 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 157 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 189 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 194 bp overlap
EZH2 5 datasets
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 103 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 58 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 194 bp overlap
ChIP T98G GSE112240.EZH2.T98G 176 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 194 bp overlap
IRF4 1 dataset
ChIP U266 GSE142493.IRF4.U266 67 bp overlap
JUN 2 datasets
ChIP 786-O GSE86092.JUN.786-O 169 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 170 bp overlap
MCM2 1 dataset
ChIP K562 ENCFF897SNA 102 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 117 bp overlap
MCM5 1 dataset
ChIP K-562 ENCSR628APV.MCM5.K-562 163 bp overlap
NFIB 1 dataset
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 72 bp overlap
RAD21 9 datasets
ChIP H1 ENCFF698EWO 80 bp overlap
ChIP H1 ENCFF967OJF 194 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 109 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 170 bp overlap
ChIP K562 ENCFF169SQI 162 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 151 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 166 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 156 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 168 bp overlap
REST 1 dataset
ChIP LNCaP GSE119385.REST.LNCaP 84 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 112 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 189 bp overlap
STAG1 3 datasets
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 141 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 134 bp overlap
ChIP K-562 ENCSR153HNT.STAG1.K-562 130 bp overlap
SUZ12 2 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 194 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 194 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 176 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 127 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 131 bp overlap
ZBTB5 1 dataset
ChIP K-562 ENCSR389PWB.ZBTB5.K-562 194 bp overlap