chr10 : 12,489,814 – 12,490,130

316 bp 49 TFs 0 linked genes

This 316 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

49 transcription factors

AR 1 dataset

ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 245 bp overlap

ASCL1 2 datasets

Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap

Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap

Ascl2 1 dataset

Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

BHLHE40 1 dataset

ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 197 bp overlap

BRCA1 1 dataset

ChIP SH-EP_pWZL-MYCNwt GSE111905.BRCA1.SH-EP_pWZL-MYCNwt 97 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF031ISE 254 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 134 bp overlap

ERF::NHLH1 1 dataset

Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap

ERG 1 dataset

ChIP MCF-7 GSE23730.ERG.MCF-7 198 bp overlap

ESR1 5 datasets

ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap

ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 227 bp overlap

ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 291 bp overlap

ChIP MCF-7_GLYC ERP002305.ESR1.MCF-7_GLYC 181 bp overlap

ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 316 bp overlap

EZH2 1 dataset

ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 243 bp overlap

GATA2 1 dataset

ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 219 bp overlap

GATA6 2 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 106 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 123 bp overlap

HIF3A 1 dataset

ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 216 bp overlap

HIVEP1 1 dataset

ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 188 bp overlap

Hand1 1 dataset

Motif DE_24h DE_24h-Hand1_MA2123.1 9 bp overlap

Hand1::Tcf3 1 dataset

Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap

KDM4B 1 dataset

ChIP K-562 ENCSR642VZY.KDM4B.K-562 181 bp overlap

MED1 1 dataset

ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 221 bp overlap

MSANTD3 1 dataset

Motif DE_24h DE_24h-MSANTD3_MA1523.2 7 bp overlap

MTA1 1 dataset

ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 169 bp overlap

MYOD1 1 dataset

ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 293 bp overlap

MYOG 1 dataset

Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap

NFKB1 2 datasets

ChIP HEK293T GSE129618.NFKB1.HEK293T 92 bp overlap

ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 89 bp overlap

NHLH1 1 dataset

Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

POLR2A 1 dataset

ChIP spleen ENCFF706IUS 316 bp overlap

POU5F1 2 datasets

ChIP BG03 GSE21614.POU5F1.BG03 198 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 287 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 316 bp overlap

SMAD2 2 datasets

Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap

ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 281 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 218 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 316 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 316 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 316 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 316 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 316 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 278 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 314 bp overlap

SMC1A 1 dataset

ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d0 257 bp overlap

TBX5 4 datasets

ChIP G296S GSE85628.TBX5.G296S 188 bp overlap

ChIP G296S_2 GSE85628.TBX5.G296S_2 188 bp overlap

ChIP G296S_4 GSE85628.TBX5.G296S_4 269 bp overlap

ChIP hiPSC GSE81585.TBX5.hiPSC 256 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap

TEAD4 2 datasets

ChIP ESC S26-ESC-d0-TEAD4-exp1 270 bp overlap

ChIP H1 ENCFF778PAX 232 bp overlap

TP63 2 datasets

ChIP breast-organoid GSE113909.TP63.breast-organoid 116 bp overlap

ChIP keratinocyte GSE33571.TP63.keratinocyte 133 bp overlap

TRIM25 1 dataset

ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 259 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

ZBTB48 1 dataset

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 316 bp overlap

ZNF320 1 dataset

Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap

ZNF550 1 dataset

ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 262 bp overlap

ZNF669 1 dataset

Motif DE_12h DE_12h-ZNF669_MA1985.1 15 bp overlap

ZNF90 1 dataset

ChIP HEK293T GSE78099.ZNF90.HEK293T 316 bp overlap

ZSCAN31 1 dataset

Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap

Zfp335 1 dataset

Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap