chr9 : 100,469,038 – 100,469,336
298 bp 55 TFs 1 linked gene
This 298 bp open chromatin element is linked to TMEFF1 and is bound by 55 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TMEFF1 3.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:100,464,038 – 100,474,336
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ATF3 1 dataset
Motif DE_36h DE_36h-ATF3_MA0605.3 10 bp overlap
ATF7 1 dataset
Motif DE_36h DE_36h-ATF7_MA0834.2 10 bp overlap
Atf1 1 dataset
Motif DE_36h DE_36h-Atf1_MA0604.1 8 bp overlap
BACH2 1 dataset
Motif DE_36h DE_36h-BACH2_MA1470.2 19 bp overlap
BCL6 1 dataset
ChIP CD4 GSE59933.BCL6.CD4 110 bp overlap
BHLHE22 1 dataset
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF346MCV 297 bp overlap
Creb5 1 dataset
Motif DE_36h DE_36h-Creb5_MA0840.2 10 bp overlap
ERF::FIGLA 1 dataset
Motif DE_36h DE_36h-ERFFIGLA_MA1934.2 13 bp overlap
ERF::HOXB13 1 dataset
Motif DE_36h DE_36h-ERFHOXB13_MA1937.2 13 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 144 bp overlap
ETV2::DRGX 1 dataset
Motif DE_36h DE_36h-ETV2DRGX_MA1940.2 12 bp overlap
ETV5::DRGX 1 dataset
Motif DE_36h DE_36h-ETV5DRGX_MA1944.2 12 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_36h DE_36h-ETV5FIGLA_MA1945.2 14 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_36h DE_36h-ETV5FOXO1_MA1947.2 10 bp overlap
ETV5::HOXA2 1 dataset
Motif DE_36h DE_36h-ETV5HOXA2_MA1948.2 12 bp overlap
FOS 1 dataset
Motif DE_36h DE_36h-FOS_MA1951.2 13 bp overlap
FOS::JUN 1 dataset
Motif DE_36h DE_36h-FOSJUN_MA1126.2 10 bp overlap
FOSB::JUN 1 dataset
Motif DE_36h DE_36h-FOSBJUN_MA1127.1 11 bp overlap
FOSB::JUNB 1 dataset
Motif DE_36h DE_36h-FOSBJUNB_MA1136.1 10 bp overlap
FOSL1::JUN 1 dataset
Motif DE_36h DE_36h-FOSL1JUN_MA1129.1 10 bp overlap
FOSL2::JUN 1 dataset
Motif DE_36h DE_36h-FOSL2JUN_MA1131.2 10 bp overlap
FOSL2::JUNB 1 dataset
Motif DE_36h DE_36h-FOSL2JUNB_MA1139.2 10 bp overlap
FOSL2::JUND 1 dataset
Motif DE_36h DE_36h-FOSL2JUND_MA1145.2 10 bp overlap
FOXF2 1 dataset
Motif DE_36h DE_36h-FOXF2_MA0030.2 9 bp overlap
FOXK1 1 dataset
Motif DE_36h DE_36h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_36h DE_36h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_36h DE_36h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_36h DE_36h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap
FOXP2 1 dataset
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_36h DE_36h-FOXP3_MA0850.1 7 bp overlap
Foxf1 1 dataset
Motif DE_36h DE_36h-Foxf1_MA1606.2 7 bp overlap
Foxo1 1 dataset
Motif DE_36h DE_36h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_36h DE_36h-Foxo3_MA0157.4 7 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 252 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 298 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 298 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 232 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 298 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 298 bp overlap
HOXA3 1 dataset
Motif DE_36h DE_36h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_36h DE_36h-HOXA4_MA1496.2 7 bp overlap
HOXB4 2 datasets
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
HOXD4 2 datasets
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
JDP2 1 dataset
Motif DE_36h DE_36h-JDP2_MA0656.2 10 bp overlap
JUNB 1 dataset
Motif DE_36h DE_36h-JUNB_MA1140.3 11 bp overlap
MYOG 1 dataset
Motif DE_36h DE_36h-MYOG_MA0500.3 8 bp overlap
NKX6-3 1 dataset
Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap
Neurod2 1 dataset
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 176 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 274 bp overlap
POU6F1 1 dataset
Motif DE_36h DE_36h-POU6F1_MA1549.2 7 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 266 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 167 bp overlap
Tcf12 1 dataset
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
ZNF354A 1 dataset
Motif DE_36h DE_36h-ZNF354A_MA1978.2 20 bp overlap
ZNF384 1 dataset
ChIP HEK293T ENCFF019DZX 82 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 225 bp overlap
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