chr9 : 92,757,529 – 92,757,859
330 bp 33 TFs 1 linked gene
This 330 bp open chromatin element is linked to BICD2 and is bound by 33 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BICD2 7.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:92,752,529 – 92,762,859
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
AR 12 datasets
ChIP LNCaP GSE110655.AR.LNCaP 71 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 265 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 57 bp overlap
ChIP VCaP GSE148358.AR.VCaP 75 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 59 bp overlap
ChIP prostate_1636_T GSE130408.AR.prostate_1636_T 318 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 330 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 72 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 113 bp overlap
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 79 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 67 bp overlap
ChIP prostate_P23_T GSE130408.AR.prostate_P23_T 165 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 250 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 63 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 210 bp overlap
BCL11B 1 dataset
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 95 bp overlap
BHLHE22 1 dataset
ChIP CAL-1 GSE43876.BHLHE22.CAL-1 147 bp overlap
BRD4 3 datasets
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 121 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 145 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 163 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 222 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 56 bp overlap
FOXA1 18 datasets
ChIP LNCaP GSE56288.FOXA1.LNCaP 65 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 95 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 61 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 52 bp overlap
ChIP LNCaP_GSK-48H GSE114266.FOXA1.LNCaP_GSK-48H 70 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 51 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 230 bp overlap
ChIP primary-prostate-cancer_P3_DSG GSE114737.FOXA1.primary-prostate-cancer_P3_DSG 55 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 143 bp overlap
ChIP prostate_2030 GSE130408.FOXA1.prostate_2030 177 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 66 bp overlap
ChIP prostate_2078 GSE130408.FOXA1.prostate_2078 60 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 52 bp overlap
ChIP prostate_P1 GSE130408.FOXA1.prostate_P1 107 bp overlap
ChIP prostate_P13_T GSE130408.FOXA1.prostate_P13_T 65 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 51 bp overlap
ChIP prostate_P29_T GSE130408.FOXA1.prostate_P29_T 56 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 54 bp overlap
FOXK2 2 datasets
ChIP K-562 ENCSR508DQA.FOXK2.K-562 210 bp overlap
ChIP K562 ENCFF851PFH 267 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 139 bp overlap
HOXB13 29 datasets
ChIP LNCaP GSE96652.HOXB13.LNCaP 59 bp overlap
ChIP LNCaP GSE56288.HOXB13.LNCaP 71 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 58 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 63 bp overlap
ChIP prostate_2030 GSE130408.HOXB13.prostate_2030 173 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 173 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 64 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 58 bp overlap
ChIP prostate_2480 GSE130408.HOXB13.prostate_2480 67 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 121 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 66 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 73 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 60 bp overlap
ChIP prostate_P1 GSE130408.HOXB13.prostate_P1 65 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 57 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 66 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 117 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 123 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 81 bp overlap
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 67 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 58 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 105 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 58 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 88 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 61 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 77 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 56 bp overlap
ChIP prostate_P7 GSE130408.HOXB13.prostate_P7 52 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 287 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 208 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 158 bp overlap
MYCN 1 dataset
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 52 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 330 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF545MVF 127 bp overlap
PRDM10 4 datasets
ChIP HEK293 ENCFF145WQQ 248 bp overlap
ChIP HEK293 ENCFF145WQQ 165 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 272 bp overlap
ChIP K562 ENCFF740YLK 280 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 229 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 161 bp overlap
SMARCA4 1 dataset
ChIP NSC GSE125033.SMARCA4.NSC 330 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 238 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 264 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 330 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 85 bp overlap
TCF3 1 dataset
ChIP Ramos GSE139810.TCF3.Ramos 162 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 149 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 152 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 77 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 79 bp overlap
VEZF1 2 datasets
ChIP K-562 ENCSR189YMA.VEZF1.K-562 132 bp overlap
ChIP K562 ENCFF053XDV 330 bp overlap
YY1 2 datasets
ChIP ALL GSE145549.YY1.ALL 330 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 110 bp overlap
ZBTB33 3 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 229 bp overlap
ChIP K562 ENCFF427SDV 205 bp overlap
ChIP K562 ENCFF875HLX 132 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 260 bp overlap
ZNF740 1 dataset
ChIP K-562 ENCSR737UST.ZNF740.K-562 136 bp overlap
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