chr1 : 165,354,810 165,355,111
301 bp 29 TFs 1 linked gene
This 301 bp open chromatin element is linked to LMX1A and is bound by 29 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LMX1A 634 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:165,349,810 – 165,360,111
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 184 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 171 bp overlap
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 140 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 162 bp overlap
BRD4 3 datasets
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 301 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 227 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 119 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 59 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 118 bp overlap
ChIP BLaER1 ENCFF460KDD 57 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 225 bp overlap
EZH2 15 datasets
ChIP GM12878 ENCFF635TDF 216 bp overlap
ChIP GM23338 ENCFF613YON 301 bp overlap
ChIP GM23338 ENCFF886DXX 301 bp overlap
ChIP H1 ENCFF232NZA 301 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 301 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 301 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 301 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 301 bp overlap
ChIP fibroblast of lung ENCFF479BAW 301 bp overlap
ChIP hESC GSE113817.EZH2.hESC 208 bp overlap
ChIP hepatocyte ENCFF552DZB 301 bp overlap
ChIP keratinocyte ENCFF070STK 55 bp overlap
ChIP neural cell ENCFF610EPB 112 bp overlap
ChIP neural progenitor cell ENCFF018MKA 301 bp overlap
ChIP neural progenitor cell ENCFF472NFV 301 bp overlap
GATA6 3 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 110 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 233 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 101 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 81 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 200 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 73 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 150 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 301 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 207 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 266 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 270 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 301 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 171 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 110 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 205 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 273 bp overlap
SRSF3 2 datasets
ChIP K-562 ENCSR268QIQ.SRSF3.K-562 213 bp overlap
ChIP K-562 GSE120104.SRSF3.K-562 202 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 294 bp overlap
SUZ12 9 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 298 bp overlap
ChIP H1 ENCFF507HGF 216 bp overlap
ChIP H1 ENCFF881NFR 301 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 301 bp overlap
ChIP K-562 ENCSR412CTM.SUZ12.K-562 194 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 301 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 292 bp overlap
ChIP NT2/D1 ENCFF574SXS 301 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 295 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 301 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 149 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 194 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 145 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 145 bp overlap