chr1 : 161,945,915 – 161,946,422

507 bp 54 TFs 0 linked genes

This 507 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

54 transcription factors

Ar 1 dataset

Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap

Ascl2 1 dataset

Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

BRD4 3 datasets

ChIP HCC1395 GSE63581.BRD4.HCC1395 125 bp overlap

ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 163 bp overlap

ChIP MDA-MB-231 ERP003925.BRD4.MDA-MB-231 423 bp overlap

Bach1::Mafk 1 dataset

Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap

CTCF 2 datasets

Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap

ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 329 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF262VBH 302 bp overlap

ChIP BLaER1 ENCFF364PUR 222 bp overlap

Ddit3::Cebpa 1 dataset

Motif DE_12h DE_12h-Ddit3Cebpa_MA0019.2 10 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 224 bp overlap

FEZF2 1 dataset

Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

FOSL2 2 datasets

ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 81 bp overlap

ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 115 bp overlap

GATA1 1 dataset

ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 80 bp overlap

GATA2 1 dataset

ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 249 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 413 bp overlap

ChIP DE DE-GATA4-2 316 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 296 bp overlap

ChIP DE DE-GATA6-2 319 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 260 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 280 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 371 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 312 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 357 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 336 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 279 bp overlap

GTF3C2 1 dataset

ChIP H9 GSE94418.GTF3C2.H9 395 bp overlap

MED1 2 datasets

ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 146 bp overlap

ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 233 bp overlap

MYOD1 1 dataset

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 325 bp overlap

MYOG 1 dataset

Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap

NANOG 2 datasets

ChIP WA01 ENCSR000BMT.NANOG.WA01 133 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 390 bp overlap

NHLH1 1 dataset

Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap

NHLH2 1 dataset

Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

OSR2 1 dataset

Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PHF19 1 dataset

ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 287 bp overlap

Plagl1 1 dataset

Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap

RNF2 1 dataset

ChIP K562 ENCFF653BQJ 123 bp overlap

SATB1 1 dataset

Motif DE_12h DE_12h-SATB1_MA1963.2 7 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 507 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 507 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 507 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 373 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 491 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 507 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 446 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 433 bp overlap

SMARCA2 2 datasets

ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 260 bp overlap

ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 59 bp overlap

SMARCC1 2 datasets

ChIP DE_D1 S15-DE-d1-BAF155-exp1 269 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 67 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 348 bp overlap

SOX2 1 dataset

ChIP HNSC GSE69479.SOX2.HNSC 84 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 148 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

Stat2 1 dataset

Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 160 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 119 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

Yy1 1 dataset

Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap

ZBTB6 1 dataset

Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZFP14 1 dataset

Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap

ZNF135 2 datasets

Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap

ZNF320 1 dataset

Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap

ZNF460 1 dataset

Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap

ZNF701 2 datasets

Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap