Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

51 transcription factors

ASCL1 2 datasets

Motif DE_60h DE_60h-ASCL1_MA1100.3 8 bp overlap

Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap

ATF4 1 dataset

Motif DE_60h DE_60h-ATF4_MA0833.3 10 bp overlap

Ascl2 1 dataset

Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap

BRD4 1 dataset

ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 163 bp overlap

CEBPG 1 dataset

Motif DE_60h DE_60h-CEBPG_MA1636.2 10 bp overlap

CRX 2 datasets

ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 195 bp overlap

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 216 bp overlap

CTCF 13 datasets

ChIP D721Med ENCFF513FYD 211 bp overlap

Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap

Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap

ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 191 bp overlap

ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 167 bp overlap

ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 155 bp overlap

ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 114 bp overlap

ChIP NB69 GSE101295.CTCF.NB69 163 bp overlap

ChIP WERI-Rb-1 ENCFF349QKF 229 bp overlap

ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 166 bp overlap

ChIP endodermal cell ENCFF471YCZ 311 bp overlap

ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 177 bp overlap

ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 216 bp overlap

DUX4 1 dataset

Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap

Dux 1 dataset

Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 216 bp overlap

FIGLA 1 dataset

Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap

FOS 1 dataset

Motif DE_60h DE_60h-FOS_MA0476.2 8 bp overlap

FOSL1::JUND 1 dataset

Motif DE_60h DE_60h-FOSL1JUND_MA1142.2 8 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 350 bp overlap

ChIP DE DE-FOXA2-2 296 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_60h DE_60h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::FLI1 1 dataset

Motif DE_60h DE_60h-FOXO1FLI1_MA1956.2 13 bp overlap

GATA1::TAL1 1 dataset

Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap

GATA2 1 dataset

ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 135 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 350 bp overlap

ChIP DE DE-GATA4-2 350 bp overlap

ChIP foregut GSE117136.GATA4.foregut 299 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 350 bp overlap

GATA6 4 datasets

ChIP DE DE-GATA6-1 340 bp overlap

ChIP DE DE-GATA6-2 350 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 284 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 242 bp overlap

HAND2 1 dataset

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 207 bp overlap

Hand1::Tcf3 1 dataset

Motif DE_60h DE_60h-Hand1Tcf3_MA0092.2 9 bp overlap

Hmx2 1 dataset

Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap

ISL1 1 dataset

ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 242 bp overlap

Jun 1 dataset

Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap

LHX6 1 dataset

Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap

MSANTD3 1 dataset

Motif DE_60h DE_60h-MSANTD3_MA1523.2 7 bp overlap

MYOD1 1 dataset

Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap

NEUROD1 5 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 350 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 249 bp overlap

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 327 bp overlap

ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 303 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 350 bp overlap

PHOX2A 1 dataset

Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 274 bp overlap

RAD21 1 dataset

ChIP HAP1 GSE152721.RAD21.HAP1 187 bp overlap

SIX2 1 dataset

Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap

SMAD2 2 datasets

Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap

ChIP endoderm GSE29422.SMAD2.endoderm 235 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 350 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 326 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 306 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 157 bp overlap

SMARCA4 1 dataset

ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 250 bp overlap

SNAI1 1 dataset

Motif DE_60h DE_60h-SNAI1_MA1558.2 7 bp overlap

SNAI2 1 dataset

Motif DE_60h DE_60h-SNAI2_MA0745.3 8 bp overlap

SNAI3 1 dataset

Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 305 bp overlap

TCF12 1 dataset

Motif DE_60h DE_60h-TCF12_MA1648.2 7 bp overlap

TCF3 1 dataset

Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap

TCF4 1 dataset

Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap

ZEB1 1 dataset

Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap

ZFP42 1 dataset

Motif DE_60h DE_60h-ZFP42_MA1651.2 13 bp overlap

ZNF274 1 dataset

Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 147 bp overlap

ZNF528 1 dataset

Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap

Zfp335 1 dataset

Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap

Genome Browser