chr7 : 23,528,702 – 23,528,886
184 bp 34 TFs 1 linked gene
This 184 bp open chromatin element is linked to TRA2A and is bound by 34 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TRA2A 3.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:23,523,702 – 23,533,886
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
ARID4A 1 dataset
ChIP HepG2 ENCFF142DIE 184 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 184 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 159 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 52 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 184 bp overlap
CTCF 79 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 145 bp overlap
ChIP AG04450 ENCFF116DJL 184 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 179 bp overlap
ChIP GM12878 ENCSR000DRZ.CTCF.GM12878 58 bp overlap
ChIP GM23338 ENCFF531QOI 184 bp overlap
ChIP GM23338 ENCFF531QOI 50 bp overlap
ChIP GM23338 ENCFF832KWE 184 bp overlap
ChIP H9 ENCFF152GTF 137 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 87 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 79 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 184 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 118 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 121 bp overlap
ChIP HEK293 ENCFF498RMM 179 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 143 bp overlap
ChIP HFFc6 ENCFF005CJI 184 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 96 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 68 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 184 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 110 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 184 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 184 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 111 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 102 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 97 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 80 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 182 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 172 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 184 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 74 bp overlap
ChIP SK-N-SH ENCFF575DMG 184 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 184 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 184 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 178 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 116 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 162 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 184 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 184 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 128 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 118 bp overlap
ChIP brain ENCFF685VRG 184 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 184 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 126 bp overlap
ChIP chondrocyte ENCFF134ORZ 156 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 184 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 114 bp overlap
ChIP endodermal cell ENCFF471YCZ 184 bp overlap
ChIP endodermal cell ENCFF471YCZ 85 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 117 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 112 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 184 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 115 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 157 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 122 bp overlap
ChIP esophagus muscularis mucosa ENCFF182PYY 184 bp overlap
ChIP esophagus muscularis mucosa ENCFF421MEH 184 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 179 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 184 bp overlap
ChIP esophagus_squamous-epithelium ENCSR773JBP.CTCF.esophagus_squamous-epithelium 128 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 184 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 84 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 89 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 122 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 184 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 88 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 103 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 108 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 176 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 102 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 169 bp overlap
ChIP neural crest cell ENCFF182LWK 184 bp overlap
ChIP neural progenitor cell ENCFF420RBO 125 bp overlap
ChIP neural progenitor cell ENCFF581WPG 184 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 155 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 107 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 184 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 184 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 122 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 184 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 113 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 184 bp overlap
ChIP BLaER1 ENCFF274GAT 184 bp overlap
ChIP BLaER1 ENCFF364PUR 184 bp overlap
FOXM1 1 dataset
ChIP K-562 ENCSR429QPP.FOXM1.K-562 57 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 184 bp overlap
HDAC1 1 dataset
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 73 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF771OHZ 184 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 184 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 125 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE107730.INO80.Hep-G2 184 bp overlap
KMT2A 8 datasets
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 184 bp overlap
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 184 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 184 bp overlap
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 184 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 184 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 184 bp overlap
ChIP MCF-7_C-term_CX4945 GSE90762.KMT2A.MCF-7_C-term_CX4945 184 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 184 bp overlap
LCOR 1 dataset
ChIP K562 ENCFF340MHH 77 bp overlap
NR2F6 1 dataset
ChIP K562 ENCFF674RQA 149 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 184 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 184 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 175 bp overlap
POU5F1 1 dataset
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 68 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 184 bp overlap
ChIP HEK293 ENCFF145WQQ 162 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 163 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 184 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 97 bp overlap
RBBP5 1 dataset
ChIP K562 ENCFF070CVK 184 bp overlap
RBFOX2 1 dataset
ChIP K-562 GSE120104.RBFOX2.K-562 132 bp overlap
SMARCA4 5 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 68 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 184 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 184 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 124 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 184 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 60 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 184 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 184 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 184 bp overlap
ZBTB26 1 dataset
ChIP HEK293 GSE76494.ZBTB26.HEK293 91 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 146 bp overlap
ZKSCAN2 1 dataset
ChIP HEK293T GSE78099.ZKSCAN2.HEK293T 82 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 184 bp overlap
ZNF394 1 dataset
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 140 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 155 bp overlap
ZNF764 1 dataset
ChIP K562 ENCFF216SAZ 184 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 182 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 184 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 164 bp overlap
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