chr7 : 18,894,271 – 18,894,446
175 bp 31 TFs 0 linked genes
This 175 bp open chromatin element has no linked target genes and is bound by 31 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:18,889,271 – 18,899,446
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA0461.3 8 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 175 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 167 bp overlap
CTCF 78 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 175 bp overlap
ChIP A673 ENCFF123WOM 151 bp overlap
ChIP BE2C ENCFF757SRF 175 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 175 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 156 bp overlap
ChIP D721Med ENCFF513FYD 174 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP GM06990 ENCFF471OQT 173 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 134 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 175 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 119 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 124 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 175 bp overlap
ChIP GM23338 ENCFF531QOI 175 bp overlap
ChIP GM23338 ENCFF772DML 170 bp overlap
ChIP H1 ENCFF414GZI 160 bp overlap
ChIP H1 ENCFF764RHO 175 bp overlap
ChIP H54 ENCFF255TVO 158 bp overlap
ChIP H9 ENCFF152GTF 166 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 175 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 175 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 154 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 175 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 175 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 157 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 148 bp overlap
ChIP HCT116 ENCFF003KHP 175 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 145 bp overlap
ChIP HEK293 ENCFF498RMM 175 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 104 bp overlap
ChIP HFFc6 ENCFF005CJI 175 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 158 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 158 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 131 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 136 bp overlap
ChIP K-562_WT GSE140868.CTCF.K-562_WT 124 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 169 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 175 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 141 bp overlap
ChIP Loucy ENCFF359TVQ 175 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 175 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 175 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 175 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 175 bp overlap
ChIP PC-3 ENCFF487TUI 175 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 175 bp overlap
ChIP Panc1 ENCFF056JQX 175 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 165 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 175 bp overlap
ChIP SK-N-SH ENCFF575DMG 175 bp overlap
ChIP SK-N-SH ENCFF731NJX 175 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 175 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 165 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 150 bp overlap
ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 142 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 129 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 129 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 117 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 90 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 128 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 111 bp overlap
ChIP endodermal cell ENCFF471YCZ 123 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 117 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 175 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 175 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 175 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 172 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 157 bp overlap
ChIP keratinocyte ENCFF046PBT 167 bp overlap
ChIP keratinocyte ENCFF291YDC 167 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 166 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 175 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 103 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 164 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 175 bp overlap
ChIP placenta ENCFF029PHY 175 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 175 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 175 bp overlap
CTCFL 4 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 112 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 114 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 130 bp overlap
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 169 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
ERG 1 dataset
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 152 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 106 bp overlap
GATA6 1 dataset
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 151 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 78 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 175 bp overlap
ONECUT1 1 dataset
Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
PBX1 1 dataset
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
PBX2 1 dataset
Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 96 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
RAD21 15 datasets
ChIP H1 ENCFF698EWO 175 bp overlap
ChIP H1 ENCFF967OJF 175 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 172 bp overlap
ChIP HCT116 ENCFF568PEO 175 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 169 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 163 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 163 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 133 bp overlap
ChIP SK-N-SH ENCFF747MAS 175 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 175 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 175 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 175 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 140 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 166 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 159 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 119 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 146 bp overlap
SMC3 2 datasets
ChIP SK-N-SH ENCFF791WFB 175 bp overlap
ChIP SK-N-SH ENCSR000EHW.SMC3.SK-N-SH 148 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 171 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 171 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 108 bp overlap
TOX2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 78 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 99 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Huangfu Lab · Publications · Resources · Contact