chr1 : 147,538,758 – 147,538,937
179 bp 33 TFs 1 linked gene
This 179 bp open chromatin element is linked to BCL9 and is bound by 33 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BCL9 2.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:147,533,758 – 147,543,937
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
AR 1 dataset
ChIP myofibroblast GSE90772.AR.myofibroblast 68 bp overlap
ARID1A 5 datasets
ChIP 12Z GSE129781.ARID1A.12Z 97 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 179 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 179 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 179 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 179 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 179 bp overlap
BRD4 2 datasets
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 160 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 67 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 176 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF783ADE 68 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 179 bp overlap
CTCF 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 179 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 179 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 179 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 179 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 179 bp overlap
ESR1 31 datasets
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 179 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 91 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 132 bp overlap
ChIP MCF-7 GSE148277.ESR1.MCF-7 179 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 179 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 60 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 179 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 179 bp overlap
ChIP MCF-7_estradiol-progesterone_4h GSE99626.ESR1.MCF-7_estradiol-progesterone_4h 179 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 179 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 57 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 179 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 179 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 179 bp overlap
ChIP MCF-7_s5942 GSE115607.ESR1.MCF-7_s5942 134 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 179 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 179 bp overlap
ChIP breast-cancer_SS182 GSE128018.ESR1.breast-cancer_SS182 179 bp overlap
ChIP breast_tumor-xenograft_1_E2_P4 GSE93108.ESR1.breast_tumor-xenograft_1_E2_P4 179 bp overlap
ChIP breast_tumor_Female_2 GSE104399.ESR1.breast_tumor_Female_2 59 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 179 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 179 bp overlap
ChIP breast_tumor_Male_15 GSE104399.ESR1.breast_tumor_Male_15 82 bp overlap
ChIP breast_tumor_Male_16 GSE104399.ESR1.breast_tumor_Male_16 98 bp overlap
ChIP breast_tumor_Male_20 GSE104399.ESR1.breast_tumor_Male_20 179 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 179 bp overlap
ChIP breast_tumor_Male_30 GSE104399.ESR1.breast_tumor_Male_30 179 bp overlap
ChIP breast_tumor_Male_4 GSE104399.ESR1.breast_tumor_Male_4 179 bp overlap
ChIP breast_tumor_Male_7 GSE104399.ESR1.breast_tumor_Male_7 179 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 117 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 179 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 179 bp overlap
ESRRA 3 datasets
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 179 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 179 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 93 bp overlap
FOS 2 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 159 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 172 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 65 bp overlap
FOXA1 2 datasets
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 96 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 179 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 179 bp overlap
GATA4 1 dataset
ChIP foregut GSE117136.GATA4.foregut 179 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 179 bp overlap
ChIP DE DE-GATA6-2 169 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 179 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 179 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 179 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 179 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 179 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 179 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 158 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 179 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 80 bp overlap
JUN 2 datasets
ChIP MCF-7_TamR_BD610326 GSE128445.JUN.MCF-7_TamR_BD610326 179 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 179 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 179 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 179 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 86 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 81 bp overlap
ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 179 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 146 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 161 bp overlap
SMARCA4 7 datasets
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 160 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 62 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 146 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 153 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 77 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 179 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 134 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 101 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 179 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 139 bp overlap
ZNF487 1 dataset
ChIP HEK293T GSE78099.ZNF487.HEK293T 127 bp overlap
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