chr6 : 13,011,773 – 13,012,144
371 bp 40 TFs 1 linked gene
This 371 bp open chromatin element is linked to PHACTR1 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PHACTR1 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:13,006,773 – 13,017,144
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 170 bp overlap
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 307 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 272 bp overlap
ARID1A 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 366 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 265 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 176 bp overlap
ARID2 2 datasets
ChIP MCF-7_parental GSE123284.ARID2.MCF-7_parental 261 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ARID2.MCF-7_parental_4-hydroxytamoxifen 275 bp overlap
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 55 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 171 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 154 bp overlap
BRD4 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 214 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 134 bp overlap
CREBBP 1 dataset
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 247 bp overlap
CTBP1 1 dataset
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 62 bp overlap
ESR1 76 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 301 bp overlap
ChIP MCF-7 GSE68355.ESR1.MCF-7 317 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 229 bp overlap
ChIP MCF-7 GSE148277.ESR1.MCF-7 233 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 272 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 306 bp overlap
ChIP MCF-7 GSE95302.ESR1.MCF-7 213 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 218 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 307 bp overlap
ChIP MCF-7_E2 GSE72249.ESR1.MCF-7_E2 288 bp overlap
ChIP MCF-7_E2 GSE108883.ESR1.MCF-7_E2 287 bp overlap
ChIP MCF-7_E2 GSE115607.ESR1.MCF-7_E2 198 bp overlap
ChIP MCF-7_E2 GSE102410.ESR1.MCF-7_E2 204 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 207 bp overlap
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 149 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 151 bp overlap
ChIP MCF-7_E2-160min-ERalpha GSE94023.ESR1.MCF-7_E2-160min-ERalpha 155 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 201 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 173 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 199 bp overlap
ChIP MCF-7_E2PG GSE68356.ESR1.MCF-7_E2PG 236 bp overlap
ChIP MCF-7_E2_30min GSE108883.ESR1.MCF-7_E2_30min 248 bp overlap
ChIP MCF-7_E2_3h GSE108883.ESR1.MCF-7_E2_3h 286 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 162 bp overlap
ChIP MCF-7_E2_45min GSE109820.ESR1.MCF-7_E2_45min 237 bp overlap
ChIP MCF-7_E2_90min GSE109820.ESR1.MCF-7_E2_90min 276 bp overlap
ChIP MCF-7_E2_talen GSE94493.ESR1.MCF-7_E2_talen 233 bp overlap
ChIP MCF-7_FEN1-Inhi GSE95302.ESR1.MCF-7_FEN1-Inhi 166 bp overlap
ChIP MCF-7_Fulvestrant_HC11 GSE102882.ESR1.MCF-7_Fulvestrant_HC11 341 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 326 bp overlap
ChIP MCF-7_ICI GSE108883.ESR1.MCF-7_ICI 320 bp overlap
ChIP MCF-7_ICI GSE125594.ESR1.MCF-7_ICI 199 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 264 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 365 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 371 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 308 bp overlap
ChIP MCF-7_RAD1901 GSE115607.ESR1.MCF-7_RAD1901 260 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 203 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 219 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 246 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.ESR1.MCF-7_Tamoxifen 190 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 360 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 296 bp overlap
ChIP MCF-7_estradiol-Dex_75min GSE99626.ESR1.MCF-7_estradiol-Dex_75min 184 bp overlap
ChIP MCF-7_estradiol-aldosterone_4h GSE99626.ESR1.MCF-7_estradiol-aldosterone_4h 371 bp overlap
ChIP MCF-7_estradiol-progesterone_4h GSE99626.ESR1.MCF-7_estradiol-progesterone_4h 337 bp overlap
ChIP MCF-7_estradiol_45min GSE99626.ESR1.MCF-7_estradiol_45min 200 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 371 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 364 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 364 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 371 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 266 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 353 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 306 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 256 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 276 bp overlap
ChIP MCF-7_shFbxo GSE119702.ESR1.MCF-7_shFbxo 206 bp overlap
ChIP MCF-7_shFbxo_E2 GSE119702.ESR1.MCF-7_shFbxo_E2 206 bp overlap
ChIP MCF-7_shKMT2C GSE100328.ESR1.MCF-7_shKMT2C 174 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 209 bp overlap
ChIP MCF-7_shYAP1 GSE125594.ESR1.MCF-7_shYAP1 211 bp overlap
ChIP MCF-7_talen GSE94493.ESR1.MCF-7_talen 204 bp overlap
ChIP MCF-7_vehicle_4h GSE99626.ESR1.MCF-7_vehicle_4h 291 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 307 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 328 bp overlap
ChIP T-47D ENCSR000BKN.ESR1.T-47D 154 bp overlap
ChIP T-47D ENCSR000BQD.ESR1.T-47D 115 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 342 bp overlap
ChIP T-47D_JC4732 GSE126004.ESR1.T-47D_JC4732 356 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 305 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 315 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 329 bp overlap
ChIP T-47D_siCont-Veh GSE126004.ESR1.T-47D_siCont-Veh 278 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 152 bp overlap
ChIP breast-cancer_S440-2187 GSE128018.ESR1.breast-cancer_S440-2187 277 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 371 bp overlap
ESR1_D538G 2 datasets
ChIP MCF-7_E2 GSE94493.ESR1_D538G.MCF-7_E2 185 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_D538G.MCF-7_dox_E2 259 bp overlap
ESR1_Y537N 4 datasets
ChIP MCF-7_E2_talen GSE94493.ESR1_Y537N.MCF-7_E2_talen 143 bp overlap
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 268 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 158 bp overlap
ChIP MCF-7_talen GSE94493.ESR1_Y537N.MCF-7_talen 193 bp overlap
ESR1_Y537S 5 datasets
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 332 bp overlap
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 208 bp overlap
ChIP T-47D_E2 GSE94493.ESR1_Y537S.T-47D_E2 260 bp overlap
ChIP T-47D_dox GSE94493.ESR1_Y537S.T-47D_dox 181 bp overlap
ChIP T-47D_dox_E2 GSE94493.ESR1_Y537S.T-47D_dox_E2 162 bp overlap
ESRRA 1 dataset
ChIP BT-474 GSE81651.ESRRA.BT-474 159 bp overlap
EZH2 6 datasets
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 371 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 371 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 323 bp overlap
ChIP hepatocyte ENCFF552DZB 274 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 371 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 144 bp overlap
FOXA1 32 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 251 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 257 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 258 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 228 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 208 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 256 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 213 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 225 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 210 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 217 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 171 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 201 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 206 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 278 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 209 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 167 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 175 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 228 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 156 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 240 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 227 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 244 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 284 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 300 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 212 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 135 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 189 bp overlap
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 237 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 319 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 314 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 318 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 356 bp overlap
FOXA2 4 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 101 bp overlap
ChIP DE DE-FOXA2-1 371 bp overlap
ChIP DE DE-FOXA2-2 368 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 265 bp overlap
GATA3 2 datasets
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 140 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 145 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 346 bp overlap
ChIP DE DE-GATA4-2 371 bp overlap
ChIP foregut GSE117136.GATA4.foregut 326 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 371 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 371 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 371 bp overlap
ChIP DE DE-GATA6-2 371 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 371 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 266 bp overlap
ChIP foregut GSE117136.GATA6.foregut 371 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 332 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 371 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 371 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 56 bp overlap
HOXB13 1 dataset
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 154 bp overlap
KDM1A 3 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 371 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 371 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 222 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 296 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 196 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 147 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 278 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 371 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 371 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 281 bp overlap
REST 2 datasets
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 269 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 123 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 211 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 203 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 177 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 371 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 234 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 252 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 259 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 307 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 371 bp overlap
STAT3 7 datasets
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 371 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 260 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 165 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 243 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 225 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 213 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 247 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 125 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 141 bp overlap
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