chr6:10,575,366–10,576,128

chr6 : 10,575,366 – 10,576,128

762 bp 44 TFs 1 linked gene

This 762 bp open chromatin element is linked to GCNT2 and is bound by 44 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
GCNT2		9.6 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

44 transcription factors

ARNT::HIF1A 1 dataset

Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap

Atoh1 1 dataset

Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap

CEBPD 1 dataset

Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap

CREB1 3 datasets

Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap

Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap

Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

Motif DE_12h DE_12h-FOS_MA1951.2 13 bp overlap

GATA6 1 dataset

ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap

HAND2 1 dataset

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

HIF1A 1 dataset

Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap

Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap

Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap

Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap

Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap

ChIP DE_D1 S08-DE-d1-JUN-exp1 310 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 531 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 494 bp overlap

MAFF 2 datasets

Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap

Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap

MEIS1 4 datasets

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap

MGA::EVX1 2 datasets

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

Mafb 2 datasets

Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap

Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap

NANOG 4 datasets

ChIP GM23338 ENCFF065NZG 311 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 496 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 110 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 210 bp overlap

NEUROD1 1 dataset

Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 1 dataset

Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap

NKX2-5 1 dataset

Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap

Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap

Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap

Nr1h3::Rxra 1 dataset

Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 690 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 636 bp overlap

Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap

SMAD2_3 1 dataset

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 278 bp overlap

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

TBX19 1 dataset

Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap

TEAD1 4 datasets

Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap

Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap

ChIP WTC11 ENCFF502QUV 405 bp overlap

ChIP WTC11 ENCFF502QUV 341 bp overlap

TEAD2 2 datasets

Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap

Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap

TEAD3 2 datasets

Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap

Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap

TEAD4 2 datasets

Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap

Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap

Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap

TWIST1 1 dataset

Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap

Tfcp2l1 1 dataset

Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap

Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap

ZBTB7B 1 dataset

Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap

ZBTB7C 1 dataset

Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap

ZNF416 1 dataset

Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap

ZNF582 1 dataset

Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap

ZNF684 2 datasets

Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap

Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap