chr6 : 5,992,677 – 5,992,989
312 bp 33 TFs 0 linked genes
This 312 bp open chromatin element has no linked target genes and is bound by 33 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:5,987,677 – 5,997,989
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 298 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 312 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 282 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 227 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 66 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 92 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 289 bp overlap
CTCF 51 datasets
ChIP AG04449 ENCFF248MBD 129 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 118 bp overlap
ChIP GM23338 ENCFF772DML 93 bp overlap
ChIP H1 ENCFF230QSV 139 bp overlap
ChIP H1 ENCFF764RHO 56 bp overlap
ChIP H9 ENCFF152GTF 250 bp overlap
ChIP H9 ENCFF152GTF 312 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 130 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 133 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 73 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 139 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 144 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 124 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 118 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 229 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 157 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 107 bp overlap
ChIP brain ENCFF163BBN 148 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 118 bp overlap
ChIP chondrocyte ENCFF134ORZ 117 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 86 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 116 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 110 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 118 bp overlap
ChIP endodermal cell ENCFF471YCZ 106 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 99 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DWQ.CTCF.fibroblast_FORESKIN 92 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 119 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 170 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 208 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 193 bp overlap
ChIP heart right ventricle ENCFF435TKW 245 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 153 bp overlap
ChIP hepatocyte ENCFF263BLJ 233 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 145 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 154 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 141 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 98 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 108 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 86 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 196 bp overlap
ChIP nephron ENCFF589HXU 242 bp overlap
ChIP nephron ENCFF589HXU 312 bp overlap
ChIP nephron ENCFF972IQB 280 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 222 bp overlap
ChIP neural progenitor cell ENCFF420RBO 99 bp overlap
ChIP neural progenitor cell ENCFF581WPG 269 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 180 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 135 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 147 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 140 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 162 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 254 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 294 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 242 bp overlap
ESR1 1 dataset
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 303 bp overlap
EZH2 3 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 312 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 60 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 312 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 206 bp overlap
FIP1L1 1 dataset
ChIP Hep-G2 ENCSR313VZG.FIP1L1.Hep-G2 180 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 178 bp overlap
GATA6 5 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 230 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 140 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 312 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 231 bp overlap
ChIP foregut GSE117136.GATA6.foregut 224 bp overlap
JARID2 4 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 312 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 312 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 312 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 270 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 312 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 292 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 307 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 180 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 312 bp overlap
RAD21 13 datasets
ChIP H1 ENCFF698EWO 74 bp overlap
ChIP H1 ENCFF967OJF 148 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 164 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 140 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 134 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 156 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 173 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 120 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 169 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 160 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 125 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 242 bp overlap
ChIP neural cell ENCFF564MOT 249 bp overlap
RNF2 3 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 312 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 312 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 269 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 179 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 312 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 127 bp overlap
SMARCA4 1 dataset
ChIP J-Lat_GFP-Clone-A72_JQ1 GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_JQ1 240 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 101 bp overlap
ChIP neural cell ENCFF795YGY 215 bp overlap
SUZ12 2 datasets
ChIP H1 ENCFF881NFR 312 bp overlap
ChIP H1 ENCFF881NFR 312 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 302 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 52 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 312 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 108 bp overlap
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