chr1 : 99,252,591 99,253,087
496 bp 38 TFs 0 linked genes
This 496 bp open chromatin element has no linked target genes and is bound by 38 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:99,247,591 – 99,258,087
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
ATOH7 1 dataset
Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA0461.3 8 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA0818.2 10 bp overlap
BHLHE23 1 dataset
Motif DE_12h DE_12h-BHLHE23_MA0817.2 10 bp overlap
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 152 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 424 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 251 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D17 GSE139377.ERG.aortic-endothelial-cell_D17 283 bp overlap
GATA6 3 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 263 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 301 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 396 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 271 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 496 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 293 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 496 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 482 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 415 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 344 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 435 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 496 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 323 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 299 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 307 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 170 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 448 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 351 bp overlap
ChIP hESC GSE18292.NANOG.hESC 95 bp overlap
NEUROG1 1 dataset
Motif DE_12h DE_12h-NEUROG1_MA0623.2 10 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA0669.1 10 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 102 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 301 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_15 GSE104399.NR3C1.breast_tumor_Male_15 344 bp overlap
OLIG1 1 dataset
Motif DE_12h DE_12h-OLIG1_MA0826.1 10 bp overlap
OLIG2 1 dataset
Motif DE_12h DE_12h-OLIG2_MA0678.1 10 bp overlap
OLIG3 1 dataset
Motif DE_12h DE_12h-OLIG3_MA0827.1 10 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 204 bp overlap
ChIP liver ERP002306.ONECUT1.liver 225 bp overlap
POU5F1 1 dataset
ChIP OSKM GSE81899.POU5F1.OSKM 105 bp overlap
RELA 2 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 322 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 211 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 332 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 399 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 496 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 496 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 344 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 496 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 261 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 256 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 233 bp overlap
SMARCE1 1 dataset
ChIP HMLE-Twist-ER_125nM_4OHT GSE96933.SMARCE1.HMLE-Twist-ER_125nM_4OHT 185 bp overlap
SOX15 1 dataset
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 339 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 138 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA1570.1 10 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap
ChIP K-562 GSE39263.ZNF143.K-562 179 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 103 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap