chr5 : 27,729,421 27,729,816
395 bp 42 TFs 0 linked genes
This 395 bp open chromatin element has no linked target genes and is bound by 42 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:27,724,421 – 27,734,816
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
ESR1 1 dataset
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 286 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RORA 2 datasets
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap
RORB 1 dataset
Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap
RORC 2 datasets
Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap
ChIP HCC70 GSE126380.RORC.HCC70 382 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
TCF12 1 dataset
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TP53 1 dataset
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 274 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF135 4 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF460 3 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF770 2 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap