chr4 : 176,642,421 – 176,642,840
419 bp 47 TFs 0 linked genes
This 419 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:176,637,421 – 176,647,840
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
ATF6 1 dataset
Motif DE_12h DE_12h-ATF6_MA1466.2 13 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 230 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CEBPD 1 dataset
ChIP Hep-G2 ENCSR000BQJ.CEBPD.Hep-G2 94 bp overlap
CTCF 104 datasets
ChIP 81-3 ERP002246.CTCF.81-3 163 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 133 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 178 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 178 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 254 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 242 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 278 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 360 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 274 bp overlap
ChIP GM06990 ENCFF471OQT 294 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 280 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 252 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 292 bp overlap
ChIP GM12864 ENCFF357DQE 258 bp overlap
ChIP GM12865 ENCFF067GFI 257 bp overlap
ChIP GM12865 ENCSR000DRE.CTCF.GM12865 164 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 160 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 213 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 232 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 216 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 162 bp overlap
ChIP GM12872 ENCFF697BYI 281 bp overlap
ChIP GM12873 ENCFF711LOS 276 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 119 bp overlap
ChIP GM12878 ENCFF217EAX 317 bp overlap
ChIP GM12878 ENCFF485TGR 251 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCFF635MMB 217 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 389 bp overlap
ChIP GM12878 ENCSR000AKB.CTCF.GM12878 210 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 193 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 162 bp overlap
ChIP GM12878 ENCSR000DRZ.CTCF.GM12878 108 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM13977 ENCSR000DLB.CTCF.GM13977 126 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 368 bp overlap
ChIP GM23338 ENCFF531QOI 131 bp overlap
ChIP GM23338 ENCFF772DML 130 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H54 ENCFF255TVO 225 bp overlap
ChIP H9 ENCFF152GTF 261 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 258 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 164 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 104 bp overlap
ChIP HFFc6 ENCFF005CJI 419 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 201 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 215 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 150 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 180 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 124 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 363 bp overlap
ChIP ID00015 GSE76922.CTCF.ID00015 223 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 333 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 199 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 236 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 126 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 295 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 145 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 145 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 170 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 123 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 185 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 267 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 356 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 251 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 329 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 195 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 289 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 145 bp overlap
ChIP SK-N-SH ENCFF575DMG 368 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 233 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 149 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 166 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 152 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 189 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 148 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 148 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 204 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 261 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 134 bp overlap
ChIP endodermal cell ENCFF471YCZ 271 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 125 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 297 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 279 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 291 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 316 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 137 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 218 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 193 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 221 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 165 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 190 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 140 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 239 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 168 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 193 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 198 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 134 bp overlap
ChIP osteoblast ENCFF491ZJZ 343 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 228 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 419 bp overlap
EZH2 2 datasets
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 64 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 81 bp overlap
FOXA2 1 dataset
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 104 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 146 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 1 dataset
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
NFIL3 1 dataset
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
NR1H2::RXRA 1 dataset
Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap
RAD21 19 datasets
ChIP GM12878 ENCFF046CBW 264 bp overlap
ChIP GM12878 ENCFF101UQZ 191 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 200 bp overlap
ChIP GM12878 ENCSR000EAC.RAD21.GM12878 155 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 208 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 184 bp overlap
ChIP HCT116 ENCFF568PEO 293 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 201 bp overlap
ChIP Ishikawa ENCFF570JVV 225 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 121 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 225 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 184 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 222 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 164 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 269 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 169 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 189 bp overlap
RUNX2 1 dataset
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 84 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 181 bp overlap
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 189 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE76893.SMC1A.MCF-7 149 bp overlap
SMC3 1 dataset
ChIP GM12878 ENCFF085RLZ 271 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 194 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZKSCAN5 1 dataset
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF382 2 datasets
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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