chr1 : 85,197,641 – 85,198,263
622 bp 40 TFs 1 linked gene
This 622 bp open chromatin element is linked to SYDE2 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SYDE2 3.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:85,192,641 – 85,203,263
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 292 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 218 bp overlap
CC2D1A 2 datasets
ChIP K-562 ENCSR343IFJ.CC2D1A.K-562 232 bp overlap
ChIP K562 ENCFF567XUT 298 bp overlap
CHAMP1 4 datasets
ChIP K-562 ENCSR065XVO.CHAMP1.K-562 320 bp overlap
ChIP K-562 ENCSR315NNL.CHAMP1.K-562 288 bp overlap
ChIP K562 ENCFF429USX 114 bp overlap
ChIP K562 ENCFF860ZIW 169 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 268 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 131 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 334 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 22 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 155 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 187 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 275 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 237 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 156 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 191 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 126 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 136 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 174 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.FOXA1.MCF-7_ARID1A-KO 241 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 258 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 281 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 280 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 222 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 186 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 259 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 271 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 227 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 190 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 224 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 310 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 219 bp overlap
FOXA2 8 datasets
ChIP DE DE-FOXA2-1 369 bp overlap
ChIP DE DE-FOXA2-2 361 bp overlap
ChIP HepG2 ENCFF570ABM 175 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 308 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 246 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 264 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 148 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 287 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 185 bp overlap
FOXM1 2 datasets
ChIP K-562 ENCSR429QPP.FOXM1.K-562 254 bp overlap
ChIP K562 ENCFF255RHV 411 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 212 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 246 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 276 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF133OLU 442 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 188 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 125 bp overlap
ChIP ML-2_DMSO-D3 GSE127507.KMT2A.ML-2_DMSO-D3 491 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 195 bp overlap
MYBL2 1 dataset
ChIP K562 ENCFF299JBQ 397 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 198 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
NFIC::TLX1 1 dataset
Motif DE_12h DE_12h-NFICTLX1_MA0119.1 14 bp overlap
PSIP1 2 datasets
ChIP ML-2 GSE95511.PSIP1.ML-2 448 bp overlap
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 223 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR468LUO.SIN3A.MCF-7 173 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 252 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 307 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 297 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 295 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 302 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 451 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 480 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TRIM24 1 dataset
ChIP K562 ENCFF616RIL 451 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 622 bp overlap
ChIP K562 ENCFF875HLX 566 bp overlap
ZMYM3 1 dataset
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 86 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF445 1 dataset
ChIP K562 ENCFF939SEG 325 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
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