chr4 : 161,461,833 – 161,462,501

668 bp 59 TFs 0 linked genes

This 668 bp open chromatin element has no linked target genes and is bound by 59 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

59 transcription factors

Arid3a 2 datasets

Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap

Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap

CDX2 1 dataset

ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 118 bp overlap

DPRX 1 dataset

Motif DE_36h DE_36h-DPRX_MA1480.2 9 bp overlap

EOMES 2 datasets

ChIP hESC GSE26097.EOMES.hESC 131 bp overlap

ChIP hESC GSE26097.EOMES.hESC 263 bp overlap

ERF::NHLH1 2 datasets

Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap

Motif DE_36h DE_36h-ERFNHLH1_MA1938.2 16 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-1 269 bp overlap

FOXD2 2 datasets

Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap

Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap

GATA1::TAL1 1 dataset

Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 403 bp overlap

ChIP DE DE-GATA4-2 357 bp overlap

GATA6 10 datasets

ChIP DE DE-GATA6-1 461 bp overlap

ChIP DE DE-GATA6-2 344 bp overlap

Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 543 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 617 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 512 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 531 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 668 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 549 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 379 bp overlap

Gata3 1 dataset

Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap

HAND2 2 datasets

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap

IRF2 2 datasets

Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap

Motif DE_36h DE_36h-IRF2_MA0051.2 16 bp overlap

IRF3 2 datasets

Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap

Motif DE_36h DE_36h-IRF3_MA1418.2 17 bp overlap

IRF5 2 datasets

Motif DE_12h DE_12h-IRF5_MA1420.1 14 bp overlap

Motif DE_36h DE_36h-IRF5_MA1420.1 14 bp overlap

IRF9 2 datasets

Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap

Motif DE_36h DE_36h-IRF9_MA0653.1 15 bp overlap

Irf1 2 datasets

Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap

Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap

Isl1 2 datasets

Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap

Motif DE_36h DE_36h-Isl1_MA1608.2 7 bp overlap

Lef1 1 dataset

Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap

MGA 2 datasets

Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap

Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap

Mecom 1 dataset

Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap

NEUROG2 2 datasets

Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap

Motif DE_36h DE_36h-NEUROG2_MA1642.2 7 bp overlap

NFATC3 2 datasets

Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap

Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap

NFIL3 1 dataset

Motif DE_36h DE_36h-NFIL3_MA0025.3 9 bp overlap

NKX6-3 2 datasets

Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap

Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap

NUP98-HOXA9 1 dataset

ChIP HEK293-FT GSE62586.NUP98-HOXA9.HEK293-FT 98 bp overlap

Nfatc1 2 datasets

Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap

Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap

ONECUT2 1 dataset

ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 59 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap

Prdm14 1 dataset

Motif DE_36h DE_36h-Prdm14_MA1998.2 8 bp overlap

Prdm5 2 datasets

Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap

Motif DE_36h DE_36h-Prdm5_MA1999.2 11 bp overlap

Ptf1A 2 datasets

Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap

Motif DE_36h DE_36h-Ptf1A_MA1618.2 9 bp overlap

RAD21 1 dataset

ChIP HAP1 GSE152721.RAD21.HAP1 180 bp overlap

RBPJ 1 dataset

Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 500 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 668 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 668 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 661 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 668 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 535 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 544 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 447 bp overlap

SMARCC1 2 datasets

ChIP DE_D1 S15-DE-d1-BAF155-exp1 82 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 419 bp overlap

SOX10 1 dataset

Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap

SPIB 1 dataset

Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap

STAT1::STAT2 2 datasets

Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap

Motif DE_36h DE_36h-STAT1STAT2_MA0517.2 13 bp overlap

Spi1 1 dataset

Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap

Stat2 2 datasets

Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap

Motif DE_36h DE_36h-Stat2_MA1623.2 10 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 198 bp overlap

TBX1 2 datasets

Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap

Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap

TBX15 2 datasets

Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap

Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap

TBX2 2 datasets

Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap

Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap

TBX4 2 datasets

Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap

Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap

TBX5 2 datasets

Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap

Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap

TBXT 2 datasets

Motif DE_12h DE_12h-TBXT_MA0009.2 16 bp overlap

Motif DE_36h DE_36h-TBXT_MA0009.2 16 bp overlap

THRB 2 datasets

Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap

Motif DE_36h DE_36h-THRB_MA1576.2 18 bp overlap

TRPS1 1 dataset

Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap

TWIST1 2 datasets

Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap

Motif DE_36h DE_36h-TWIST1_MA1123.3 8 bp overlap

ZBTB18 2 datasets

Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap

Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap

ZNF214 1 dataset

Motif DE_36h DE_36h-ZNF214_MA1975.2 13 bp overlap

ZNF410 1 dataset

Motif DE_36h DE_36h-ZNF410_MA0752.2 16 bp overlap

ZNF677 1 dataset

Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap

ZNF680 2 datasets

Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap

Motif DE_36h DE_36h-ZNF680_MA1729.2 11 bp overlap

ZNF768 1 dataset

Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap

Zfp809 2 datasets

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap

Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap