chr4 : 117,429,141 117,429,392
251 bp 27 TFs 0 linked genes
This 251 bp open chromatin element has no linked target genes and is bound by 27 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:117,424,141 – 117,434,392
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
BRD4 4 datasets
ChIP 402-91 GSE111253.BRD4.402-91 139 bp overlap
ChIP 402-91 GSE111253.BRD4.402-91 64 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 251 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 119 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 202 bp overlap
CTCF 174 datasets
ChIP 22Rv1 ENCFF466OXN 251 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 251 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 150 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 251 bp overlap
ChIP A673 ENCFF123WOM 251 bp overlap
ChIP A673 ENCFF123WOM 136 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 190 bp overlap
ChIP C4-2B ENCFF821XVN 251 bp overlap
ChIP CHRF28811 ERP008568.CTCF.CHRF28811 191 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP DND-41 ENCFF913MRA 251 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 167 bp overlap
ChIP DOHH2 ENCFF637WNW 251 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 251 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 165 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 251 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 251 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 200 bp overlap
ChIP GM06990 ENCFF471OQT 251 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 169 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 179 bp overlap
ChIP GM12864 ENCFF357DQE 241 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 142 bp overlap
ChIP GM12865 ENCFF067GFI 251 bp overlap
ChIP GM12865 ENCSR000DRE.CTCF.GM12865 129 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 141 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 202 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 160 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 190 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 197 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 227 bp overlap
ChIP GM12873 ENCFF711LOS 251 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 210 bp overlap
ChIP GM12874 ENCFF942MTD 247 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 102 bp overlap
ChIP GM12875 ENCFF081UCQ 249 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 166 bp overlap
ChIP GM12878 ENCFF485TGR 245 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 166 bp overlap
ChIP GM12878 ENCSR000DRZ.CTCF.GM12878 110 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 112 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM13977 ENCSR000DLB.CTCF.GM13977 103 bp overlap
ChIP GM23338 ENCFF531QOI 236 bp overlap
ChIP GM23338 ENCFF772DML 143 bp overlap
ChIP GM23338 ENCFF832KWE 251 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 86 bp overlap
ChIP H9 ENCFF152GTF 233 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 202 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 225 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 251 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 205 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 251 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 232 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 205 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 236 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 251 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 251 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 200 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 191 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 169 bp overlap
ChIP HCT116 ENCFF003KHP 251 bp overlap
ChIP HCT116 ENCFF209YMI 246 bp overlap
ChIP HEK293 ENCFF498RMM 248 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 160 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 174 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 251 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 207 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 185 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 96 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 115 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 82 bp overlap
ChIP HepG2 ENCFF127KUP 223 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 251 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 174 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 123 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 143 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 125 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 103 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 190 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 128 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 141 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 138 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 127 bp overlap
ChIP KMS-11 ENCFF853JKX 251 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 198 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 251 bp overlap
ChIP Loucy ENCFF359TVQ 251 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 251 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 176 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 100 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 215 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 251 bp overlap
ChIP MM.1S ENCFF869JMQ 251 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 251 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 227 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 141 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 251 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 251 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 251 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 251 bp overlap
ChIP PC-3 ENCFF487TUI 251 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 251 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 204 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 141 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 251 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 129 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 251 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 189 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 251 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 155 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 220 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 192 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 226 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-4h 193 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 193 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 182 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 145 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 206 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 212 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 226 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 122 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 190 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 139 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 251 bp overlap
ChIP chondrocyte ENCFF134ORZ 251 bp overlap
ChIP endodermal cell ENCFF471YCZ 220 bp overlap
ChIP endothelial cell ENCFF663LIE 251 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 160 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 149 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 251 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 202 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 214 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 228 bp overlap
ChIP erythroid_Don001 GSE137982.CTCF.erythroid_Don001 159 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 179 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 188 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 189 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 199 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 251 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 240 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 162 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 239 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 186 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 230 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 221 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 250 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 209 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 140 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 204 bp overlap
ChIP keratinocyte ENCFF667ULX 251 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 247 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 177 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 166 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 222 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 251 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 251 bp overlap
ChIP leukemia_CEBPA-168h GSE142161.CTCF.leukemia_CEBPA-168h 251 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 251 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 251 bp overlap
ChIP neural progenitor cell ENCFF420RBO 251 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 245 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 186 bp overlap
ChIP placenta ENCFF029PHY 251 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 247 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 212 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 158 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 249 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 241 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 218 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 222 bp overlap
EZH1 1 dataset
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 127 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 196 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 226 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYF6 2 datasets
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
Motif ES_0h ES_0h-MYF6_MA0667.1 10 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 97 bp overlap
RAD21 10 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 104 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 229 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 98 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 216 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 178 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 166 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 170 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 162 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 155 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
TRIM24 2 datasets
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 198 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 183 bp overlap
TRIM28 3 datasets
ChIP AF22 GSE84259.TRIM28.AF22 251 bp overlap
ChIP HEK293 ENCFF582MWI 251 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 251 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 122 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 122 bp overlap
ZNF382 1 dataset
Motif ES_0h ES_0h-ZNF382_MA1594.1 24 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 156 bp overlap
ZSCAN16 2 datasets
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
Motif ES_0h ES_0h-ZSCAN16_MA2100.1 18 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap