chr4 : 111,021,009 111,021,453
444 bp 62 TFs 0 linked genes
This 444 bp open chromatin element has no linked target genes and is bound by 62 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:111,016,009 – 111,026,453
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
DPRX 1 dataset
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 206 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FOS 1 dataset
Motif DE_60h DE_60h-FOS_MA0476.2 8 bp overlap
FOXA1 26 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 335 bp overlap
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 209 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 304 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 208 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 205 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 233 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 156 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 260 bp overlap
ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 221 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 245 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 340 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 270 bp overlap
Motif DE_60h DE_60h-FOXA1_MA0148.5 8 bp overlap
ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 245 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 311 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 268 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 158 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 233 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 243 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 161 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 266 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 215 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 261 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 240 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 229 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 213 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 444 bp overlap
ChIP DE DE-FOXA2-2 444 bp overlap
Motif DE_60h DE_60h-FOXA2_MA0047.4 8 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 314 bp overlap
FOXA3 1 dataset
Motif DE_60h DE_60h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
FOXD1 1 dataset
Motif DE_60h DE_60h-FOXD1_MA0031.2 7 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXF2 1 dataset
Motif DE_60h DE_60h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_60h DE_60h-FOXG1_MA0613.1 8 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
FOXI1 1 dataset
Motif DE_60h DE_60h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_60h DE_60h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_60h DE_60h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_60h DE_60h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_60h DE_60h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_60h DE_60h-FOXO6_MA0849.1 7 bp overlap
FOXP1 2 datasets
Motif DE_60h DE_60h-FOXP1_MA0481.4 7 bp overlap
ChIP H9 GSE31006.FOXP1.H9 124 bp overlap
FOXP2 1 dataset
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_60h DE_60h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_60h DE_60h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_60h DE_60h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_60h DE_60h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_60h DE_60h-Foxj2_MA0614.1 8 bp overlap
Foxl2 1 dataset
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_60h DE_60h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_60h DE_60h-Foxo3_MA0157.4 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 332 bp overlap
ChIP DE DE-GATA4-2 302 bp overlap
ChIP foregut GSE117136.GATA4.foregut 285 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 375 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 294 bp overlap
ChIP DE DE-GATA6-2 335 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 335 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 291 bp overlap
ChIP foregut GSE117136.GATA6.foregut 285 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 205 bp overlap
NANOG 6 datasets
ChIP WA01 ERP004238.NANOG.WA01 249 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 193 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 419 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 295 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 285 bp overlap
ChIP hESC GSE18292.NANOG.hESC 183 bp overlap
NKX2-3 1 dataset
Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 300 bp overlap
OSR2 1 dataset
Motif DE_60h DE_60h-OSR2_MA1646.2 8 bp overlap
Prdm14 1 dataset
Motif DE_60h DE_60h-Prdm14_MA1998.2 8 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
SIX1 1 dataset
Motif DE_60h DE_60h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 328 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TFCP2 1 dataset
Motif DE_60h DE_60h-TFCP2_MA1968.2 9 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZIM3 1 dataset
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZNF766 1 dataset
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
Zfp809 1 dataset
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Zic2 1 dataset
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap