chr4 : 30,213,620 – 30,214,209
589 bp 41 TFs 0 linked genes
This 589 bp open chromatin element has no linked target genes and is bound by 41 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:30,208,620 – 30,219,209
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 484 bp overlap
Atoh1 3 datasets
Motif DE_48h DE_48h-Atoh1_MA1467.3 7 bp overlap
Motif DE_60h DE_60h-Atoh1_MA1467.3 7 bp overlap
Motif DE_72h DE_72h-Atoh1_MA1467.3 7 bp overlap
BRD4 2 datasets
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 366 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 233 bp overlap
Dmrt1 1 dataset
Motif DE_48h DE_48h-Dmrt1_MA1603.2 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 567 bp overlap
ChIP DE DE-FOXA2-2 537 bp overlap
GATA2 3 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA3 5 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 548 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 409 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 395 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 208 bp overlap
ChIP NGP GSE65664.GATA3.NGP 268 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 589 bp overlap
ChIP DE DE-GATA4-2 589 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 278 bp overlap
GATA5 3 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 578 bp overlap
ChIP DE DE-GATA6-2 589 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 580 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 429 bp overlap
ChIP foregut GSE117136.GATA6.foregut 330 bp overlap
Gata3 3 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HAND2 5 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 543 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
Motif DE_72h DE_72h-HAND2_MA1638.2 6 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 280 bp overlap
MEIS1 4 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS2 4 datasets
Motif DE_48h DE_48h-MEIS2_MA0774.1 8 bp overlap
Motif DE_48h DE_48h-MEIS2_MA0774.1 8 bp overlap
Motif DE_60h DE_60h-MEIS2_MA0774.1 8 bp overlap
Motif DE_72h DE_72h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_48h DE_48h-MEIS3_MA0775.2 7 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 364 bp overlap
Mecom 3 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
Msgn1 3 datasets
Motif DE_48h DE_48h-Msgn1_MA1524.3 10 bp overlap
Motif DE_60h DE_60h-Msgn1_MA1524.3 10 bp overlap
Motif DE_72h DE_72h-Msgn1_MA1524.3 10 bp overlap
NEUROD1 3 datasets
Motif DE_48h DE_48h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_60h DE_60h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_72h DE_72h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 3 datasets
Motif DE_48h DE_48h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_60h DE_60h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_72h DE_72h-NEUROG2_MA1642.2 7 bp overlap
NR3C1 2 datasets
ChIP MCF-7 GSE152203.NR3C1.MCF-7 195 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 165 bp overlap
Neurod2 3 datasets
Motif DE_48h DE_48h-Neurod2_MA0668.3 8 bp overlap
Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap
Motif DE_72h DE_72h-Neurod2_MA0668.3 8 bp overlap
Nr2e3 1 dataset
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 589 bp overlap
Ptf1A 3 datasets
Motif DE_48h DE_48h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1618.2 9 bp overlap
RBPJ 5 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 442 bp overlap
SMARCA4 1 dataset
ChIP NGP GSE134626.SMARCA4.NGP 154 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 338 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 536 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 189 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 409 bp overlap
TFAP2A 3 datasets
Motif DE_48h DE_48h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_60h DE_60h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_72h DE_72h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 3 datasets
Motif DE_48h DE_48h-TFAP2B_MA0812.2 9 bp overlap
Motif DE_60h DE_60h-TFAP2B_MA0812.2 9 bp overlap
Motif DE_72h DE_72h-TFAP2B_MA0812.2 9 bp overlap
TFAP2E 3 datasets
Motif DE_48h DE_48h-TFAP2E_MA1569.2 9 bp overlap
Motif DE_60h DE_60h-TFAP2E_MA1569.2 9 bp overlap
Motif DE_72h DE_72h-TFAP2E_MA1569.2 9 bp overlap
TRPS1 3 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Yy1 1 dataset
Motif DE_48h DE_48h-Yy1_MA0095.4 8 bp overlap
ZNF189 2 datasets
Motif DE_48h DE_48h-ZNF189_MA1725.2 9 bp overlap
Motif DE_60h DE_60h-ZNF189_MA1725.2 9 bp overlap
ZNF213 2 datasets
Motif DE_48h DE_48h-ZNF213_MA2121.1 12 bp overlap
Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap
ZNF528 3 datasets
Motif DE_48h DE_48h-ZNF528_MA1597.1 17 bp overlap
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
Motif DE_72h DE_72h-ZNF528_MA1597.1 17 bp overlap
Zfp809 3 datasets
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap
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