chr3 : 192,894,748 – 192,895,270
522 bp 38 TFs 0 linked genes
This 522 bp open chromatin element has no linked target genes and is bound by 38 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:192,889,748 – 192,900,270
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 146 bp overlap
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 160 bp overlap
BRD4 4 datasets
ChIP 402-91 GSE111253.BRD4.402-91 266 bp overlap
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 342 bp overlap
ChIP KK-1_DMSO GSE94732.BRD4.KK-1_DMSO 474 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 262 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 283 bp overlap
CTBP2 1 dataset
ChIP MCF-7_trps1_ko GSE107013.CTBP2.MCF-7_trps1_ko 125 bp overlap
CTCF 8 datasets
ChIP GM04604 GSE148179.CTCF.GM04604 116 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 102 bp overlap
ChIP HEK293 ENCFF498RMM 240 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 181 bp overlap
ChIP MCF-7 ENCFF139NQI 201 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 114 bp overlap
ChIP endodermal cell ENCFF471YCZ 261 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 131 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF813OXE 192 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 223 bp overlap
ESR1 3 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 250 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 146 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 263 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 289 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 176 bp overlap
ChIP DE DE-FOXA2-1 347 bp overlap
ChIP DE DE-FOXA2-2 319 bp overlap
GATA3 11 datasets
ChIP A-549 ENCSR000BTI.GATA3.A-549 229 bp overlap
ChIP A549 ENCFF226FVV 343 bp overlap
ChIP MCF-7 ENCFF352QVM 177 bp overlap
ChIP MCF-7 ENCFF437NQS 310 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 268 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 270 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 143 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 200 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 160 bp overlap
ChIP SK-N-SH ENCFF040SSB 349 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 177 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 192 bp overlap
GATA4 8 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 67 bp overlap
ChIP DE DE-GATA4-1 289 bp overlap
ChIP DE DE-GATA4-2 345 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 246 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 321 bp overlap
ChIP foregut GSE117136.GATA4.foregut 300 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 285 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 325 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 287 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 206 bp overlap
ChIP DE DE-GATA6-1 295 bp overlap
ChIP DE DE-GATA6-2 328 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 502 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 336 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 435 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 358 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 376 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 522 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 282 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 334 bp overlap
ChIP foregut GSE117136.GATA6.foregut 304 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 265 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 301 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 330 bp overlap
HDAC2 1 dataset
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 150 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 274 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 259 bp overlap
NCAPH2 2 datasets
ChIP RMG-I GSE120058.NCAPH2.RMG-I 192 bp overlap
ChIP RMG-I GSE120058.NCAPH2.RMG-I 60 bp overlap
NR2F2 2 datasets
ChIP MCF-7 ENCFF329FZB 314 bp overlap
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 130 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 288 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 312 bp overlap
RCOR1 2 datasets
ChIP HeLa-S3 ENCFF471KYI 371 bp overlap
ChIP HeLa-S3 ENCSR000ECM.RCOR1.HeLa-S3 145 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 90 bp overlap
SIN3A 2 datasets
ChIP MCF-7 ENCFF521RDC 386 bp overlap
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 207 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 294 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 297 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 284 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 269 bp overlap
SMARCA4 3 datasets
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 365 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 75 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 202 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 207 bp overlap
SNAI2 3 datasets
ChIP PC-9_1DF GSE131687.SNAI2.PC-9_1DF 212 bp overlap
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 186 bp overlap
ChIP keratinocyte_LacZ_DIFF GSE55421.SNAI2.keratinocyte_LacZ_DIFF 144 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 403 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 228 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 239 bp overlap
TRPS1 3 datasets
ChIP MCF-7 GSE133072.TRPS1.MCF-7 240 bp overlap
ChIP T-47D GSE114213.TRPS1.T-47D 310 bp overlap
ChIP T-47D GSE107013.TRPS1.T-47D 141 bp overlap
ZEB1 1 dataset
ChIP MIA-PaCa-2 GSE88734.ZEB1.MIA-PaCa-2 316 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 214 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 206 bp overlap
ZNF85 1 dataset
ChIP HEK293 GSE76494.ZNF85.HEK293 97 bp overlap
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