chr3 : 186,469,999 186,470,758
759 bp 31 TFs 2 linked genes
This 759 bp open chromatin element is linked to TBCCD1 and DNAJB11 and is bound by 31 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TBCCD1 97.0 kb Distal Multiome
DNAJB11 100.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:186,464,999 – 186,475,758
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP BE2C GSE80151.BRD4.BE2C 215 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 215 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 177 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 134 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 578 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 230 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 267 bp overlap
EZH2 1 dataset
ChIP PC-9 ENCSR793USK.EZH2.PC-9 190 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 642 bp overlap
ChIP DE DE-FOXA2-2 610 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 403 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 382 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 145 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 161 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 157 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 679 bp overlap
ChIP DE DE-GATA4-2 759 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 382 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 261 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 693 bp overlap
ChIP DE DE-GATA6-2 759 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 759 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 345 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 647 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 356 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 227 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 215 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 162 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 384 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 207 bp overlap
MYCN 5 datasets
ChIP BE2C GSE80151.MYCN.BE2C 198 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 267 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 137 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 385 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 194 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 159 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 201 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 249 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 195 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 546 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 255 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 316 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 153 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 759 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 606 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 380 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 579 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 735 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 528 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 528 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 104 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 317 bp overlap