chr3 : 153,979,925 153,980,546
621 bp 45 TFs 1 linked gene
This 621 bp open chromatin element is linked to LINC02006 and is bound by 45 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02006 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:153,974,925 – 153,985,546
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP RMG-I GSE120058.ARID1A.RMG-I 126 bp overlap
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 407 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 165 bp overlap
ChIP K562 ENCFF963TXY 277 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 214 bp overlap
ChIP K562 ENCFF673OEZ 208 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 71 bp overlap
ChIP BLaER1 ENCFF262VBH 227 bp overlap
DPF2 3 datasets
ChIP K562 ENCFF775HUO 411 bp overlap
ChIP MCF-7 ENCFF712EXQ 401 bp overlap
ChIP MCF-7 ENCFF712EXQ 378 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 446 bp overlap
EP300 1 dataset
ChIP MCF-7_shCtrl GSE128445.EP300.MCF-7_shCtrl 241 bp overlap
ESR1 1 dataset
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 272 bp overlap
FOS 2 datasets
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 116 bp overlap
ChIP MCF-7 ENCFF282FWZ 419 bp overlap
FOSL2 1 dataset
ChIP HepG2 ENCFF548CXY 123 bp overlap
FOXA1 3 datasets
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 53 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 326 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 479 bp overlap
ChIP DE DE-FOXA2-2 535 bp overlap
GATA1 2 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 69 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 145 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 322 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 144 bp overlap
ChIP K562 ENCFF744ALD 284 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 133 bp overlap
JUND 1 dataset
ChIP GP5D_SIRAD21 GSE51234.JUND.GP5D_SIRAD21 348 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF128TYE 435 bp overlap
ChIP K562 ENCFF128TYE 235 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 377 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 249 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 211 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 227 bp overlap
MAFG 2 datasets
ChIP HepG2 ENCFF422NZT 329 bp overlap
ChIP K562 ENCFF455EEO 408 bp overlap
NCAPH2 1 dataset
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 184 bp overlap
NCOR1 2 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 234 bp overlap
ChIP K562 ENCFF866HRM 375 bp overlap
NFE2 3 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 317 bp overlap
ChIP K562 ENCFF047YKA 172 bp overlap
ChIP K562 ENCFF163BSI 265 bp overlap
NFE2L2 1 dataset
ChIP A-549 GSE113497.NFE2L2.A-549 207 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 75 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 280 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 69 bp overlap
POLR2A 3 datasets
ChIP HCT116 ENCFF849NGT 221 bp overlap
ChIP esophagus squamous epithelium ENCFF297FPP 353 bp overlap
ChIP esophagus squamous epithelium ENCFF708IOX 432 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 519 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 308 bp overlap
SMAD3 1 dataset
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 136 bp overlap
SMAD5 1 dataset
ChIP K562 ENCFF941FJJ 190 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 178 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 201 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 252 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 120 bp overlap
SOX2 2 datasets
ChIP HCC95 GSE137459.SOX2.HCC95 179 bp overlap
ChIP TT GSE46837.SOX2.TT 124 bp overlap
TAL1 10 datasets
ChIP CD34 GSE52924.TAL1.CD34 103 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 168 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 102 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 169 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 148 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 163 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 113 bp overlap
ChIP K562 ENCFF620GMX 97 bp overlap
ChIP K562 ENCFF661CCK 198 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 152 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 185 bp overlap
ChIP K562 ENCFF931DJY 142 bp overlap
YY1 2 datasets
ChIP K-562 ENCSR000BMH.YY1.K-562 215 bp overlap
ChIP K562 ENCFF660QRE 79 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 133 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 143 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 354 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 142 bp overlap