chr3 : 153,642,053 – 153,642,912

859 bp 68 TFs 0 linked genes

This 859 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

68 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 225 bp overlap

Arid3b 2 datasets

Motif DE_48h DE_48h-Arid3b_MA0601.2 7 bp overlap

Motif DE_60h DE_60h-Arid3b_MA0601.2 7 bp overlap

BARX1 1 dataset

Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap

BARX2 1 dataset

Motif DE_60h DE_60h-BARX2_MA1471.2 9 bp overlap

BSX 1 dataset

Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap

Bach1::Mafk 2 datasets

Motif DE_48h DE_48h-Bach1Mafk_MA0591.2 12 bp overlap

Motif DE_60h DE_60h-Bach1Mafk_MA0591.2 12 bp overlap

CEBPG 2 datasets

Motif DE_48h DE_48h-CEBPG_MA0838.1 10 bp overlap

Motif DE_60h DE_60h-CEBPG_MA0838.1 10 bp overlap

Crx 2 datasets

Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

DLX1 1 dataset

Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap

Dlx3 1 dataset

Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap

Dmbx1 2 datasets

Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap

Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 254 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 789 bp overlap

ChIP DE DE-FOXA2-2 652 bp overlap

FOXD3 1 dataset

Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap

FOXE1 1 dataset

Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap

FOXO1::FLI1 2 datasets

Motif DE_48h DE_48h-FOXO1FLI1_MA1956.2 13 bp overlap

Motif DE_60h DE_60h-FOXO1FLI1_MA1956.2 13 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 625 bp overlap

ChIP DE DE-GATA4-2 680 bp overlap

GATA6 6 datasets

ChIP DE DE-GATA6-1 627 bp overlap

ChIP DE DE-GATA6-2 647 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 346 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 325 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 326 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 606 bp overlap

GBX2 1 dataset

Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap

GSC 2 datasets

Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

GSC2 2 datasets

Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

HESX1 1 dataset

Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap

Hmx1 1 dataset

Motif DE_60h DE_60h-Hmx1_MA0896.2 9 bp overlap

Hmx3 1 dataset

Motif DE_60h DE_60h-Hmx3_MA0898.2 9 bp overlap

JUN 1 dataset

ChIP ESC S34-ESC-d0-JUN-exp2 273 bp overlap

LBX2 1 dataset

Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap

MAFG::NFE2L1 2 datasets

Motif DE_48h DE_48h-MAFGNFE2L1_MA0089.3 11 bp overlap

Motif DE_60h DE_60h-MAFGNFE2L1_MA0089.3 11 bp overlap

MGA::EVX1 1 dataset

Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap

MSX1 1 dataset

Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap

Mafg 2 datasets

Motif DE_48h DE_48h-Mafg_MA0659.4 12 bp overlap

Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap

Msx3 1 dataset

Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap

NANOG 7 datasets

ChIP GM23338 ENCFF065NZG 306 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 141 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 292 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 268 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 346 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 220 bp overlap

ChIP hESC GSE18292.NANOG.hESC 193 bp overlap

Nfatc2 1 dataset

Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap

Nobox 1 dataset

Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap

OTX1 2 datasets

Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

OTX2 2 datasets

Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap

Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap

PITX1 2 datasets

Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

PITX2 2 datasets

Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap

Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap

PITX3 2 datasets

Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

POU5F1 4 datasets

ChIP GM23338 ENCFF333SNB 286 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 301 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 318 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 194 bp overlap

Pax7 1 dataset

Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap

RAD21 1 dataset

ChIP HAP1 GSE152721.RAD21.HAP1 238 bp overlap

RAX 1 dataset

Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap

RHOXF1 2 datasets

Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 276 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 535 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 531 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 249 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 263 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 261 bp overlap

SMARCC1 2 datasets

ChIP ESC S25-ESC-d0-BAF155-exp1 265 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 252 bp overlap

SOX10 1 dataset

Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 355 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 484 bp overlap

SOX18 1 dataset

Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 125 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 268 bp overlap

SOX21 1 dataset

Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap

SRY 1 dataset

Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap

Stat2 2 datasets

Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap

Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap

TEAD4 1 dataset

ChIP ESC S26-ESC-d0-TEAD4-exp1 293 bp overlap

USF1 1 dataset

ChIP WA01 ENCSR000BIU.USF1.WA01 157 bp overlap

ZIM3 2 datasets

Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap

Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap

ZNF136 1 dataset

Motif DE_60h DE_60h-ZNF136_MA1588.1 15 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 151 bp overlap

ZNF766 2 datasets

Motif DE_48h DE_48h-ZNF766_MA2098.1 9 bp overlap

Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap