chr3 : 115,626,251 – 115,626,405
154 bp 19 TFs 1 linked gene
This 154 bp open chromatin element is linked to GAP43 and is bound by 19 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GAP43 2.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:115,621,251 – 115,631,405
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
19 transcription factors
Source
Cell type
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 104 bp overlap
BRD4 2 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 150 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 154 bp overlap
CTCF 88 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 138 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 154 bp overlap
ChIP A673 ENCFF123WOM 154 bp overlap
ChIP BE2C ENCFF757SRF 154 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 154 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 144 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 154 bp overlap
ChIP GM12872 ENCFF697BYI 154 bp overlap
ChIP GM12875 ENCFF081UCQ 154 bp overlap
ChIP GM23338 ENCFF531QOI 116 bp overlap
ChIP GM23338 ENCFF772DML 154 bp overlap
ChIP H9 ENCFF152GTF 65 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 154 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 154 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 154 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 154 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 154 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 154 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 154 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 154 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 154 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 154 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 154 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 154 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 154 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 141 bp overlap
ChIP HCT116 ENCFF003KHP 154 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 96 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 86 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 154 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 78 bp overlap
ChIP HEK293 ENCFF498RMM 154 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 154 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 130 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 154 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 133 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 146 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 153 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 125 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 154 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 154 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 114 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 154 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 131 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 137 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 127 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 131 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 154 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 154 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 149 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 111 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 126 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 154 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 120 bp overlap
ChIP brain ENCFF099ASU 154 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 154 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 154 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 154 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 154 bp overlap
ChIP endodermal cell ENCFF471YCZ 128 bp overlap
ChIP endothelial cell ENCFF663LIE 154 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 117 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 154 bp overlap
ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 154 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 154 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 114 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 151 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 154 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 154 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 142 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 154 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 154 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 154 bp overlap
ChIP leukemia_CEBPA-168h GSE142161.CTCF.leukemia_CEBPA-168h 151 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 154 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 154 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 154 bp overlap
ChIP neural cell ENCFF335ADI 154 bp overlap
ChIP neural progenitor cell ENCFF420RBO 154 bp overlap
ChIP neural progenitor cell ENCFF581WPG 154 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 154 bp overlap
ChIP neuroblastoma GSE115862.CTCF.neuroblastoma 129 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 109 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 154 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 154 bp overlap
ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 154 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 154 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 122 bp overlap
EP300 1 dataset
ChIP neural cell ENCFF442QNK 154 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 56 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 154 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 154 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 117 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 125 bp overlap
MXI1 2 datasets
ChIP neural ENCSR934NHU.MXI1.neural 154 bp overlap
ChIP neural cell ENCFF623HQN 154 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 61 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 119 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 154 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 154 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 154 bp overlap
ChIP neural cell ENCFF564MOT 154 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 132 bp overlap
REST 2 datasets
ChIP neural cell ENCFF882LXX 154 bp overlap
ChIP neural cell ENCFF882LXX 147 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER 121 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 154 bp overlap
SPI1 5 datasets
ChIP EM-3 GSE128834.SPI1.EM-3 107 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 132 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 143 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 154 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 151 bp overlap
TAF1 2 datasets
ChIP neural ENCSR000BTX.TAF1.neural 154 bp overlap
ChIP neural cell ENCFF468SPD 154 bp overlap
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