chr3 : 114,831,723 114,832,550
827 bp 55 TFs 0 linked genes
This 827 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:114,826,723 – 114,837,550
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 163 bp overlap
Arid3a 2 datasets
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap
BCL6 2 datasets
Motif DE_48h DE_48h-BCL6_MA0463.3 13 bp overlap
Motif DE_60h DE_60h-BCL6_MA0463.3 13 bp overlap
BCL6B 2 datasets
Motif DE_48h DE_48h-BCL6B_MA0731.1 17 bp overlap
Motif DE_60h DE_60h-BCL6B_MA0731.1 17 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 300 bp overlap
ESR1 4 datasets
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 355 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 218 bp overlap
ChIP MCF-7_ICI GSE125594.ESR1.MCF-7_ICI 195 bp overlap
ChIP MCF-7_shCtrl GSE125594.ESR1.MCF-7_shCtrl 180 bp overlap
FERD3L 1 dataset
Motif DE_60h DE_60h-FERD3L_MA1485.1 14 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA1 5 datasets
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 190 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 163 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 287 bp overlap
ChIP LNCaP_M253K GSE133386.FOXA1.LNCaP_M253K 157 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 377 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 827 bp overlap
ChIP DE DE-FOXA2-2 827 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 400 bp overlap
FOXE1 2 datasets
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
FOXN3 1 dataset
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
FOXP2 3 datasets
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
Foxl2 1 dataset
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
GATA2 1 dataset
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
GATA3 2 datasets
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 177 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 147 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 749 bp overlap
ChIP DE DE-GATA4-2 771 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 462 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 467 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 706 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 758 bp overlap
ChIP DE DE-GATA6-2 690 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 623 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 479 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 399 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 539 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HOXB13 1 dataset
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
Hand1 2 datasets
Motif DE_60h DE_60h-Hand1_MA2123.1 9 bp overlap
Motif DE_72h DE_72h-Hand1_MA2123.1 9 bp overlap
IRF7 2 datasets
Motif DE_48h DE_48h-IRF7_MA0772.2 13 bp overlap
Motif DE_60h DE_60h-IRF7_MA0772.2 13 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 377 bp overlap
MEIS1 3 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MSC 2 datasets
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
Msgn1 2 datasets
Motif DE_60h DE_60h-Msgn1_MA1524.3 10 bp overlap
Motif DE_72h DE_72h-Msgn1_MA1524.3 10 bp overlap
NFIA 1 dataset
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_60h DE_60h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
NR4A1 1 dataset
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap
RELA 1 dataset
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 185 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 486 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 157 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 235 bp overlap
SOX18 1 dataset
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
SOX8 1 dataset
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
SRY 1 dataset
Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox6 3 datasets
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
Stat2 1 dataset
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Tfcp2l1 1 dataset
Motif DE_60h DE_60h-Tfcp2l1_MA0145.2 14 bp overlap
ZBTB18 1 dataset
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZIM3 1 dataset
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZNF214 3 datasets
Motif DE_48h DE_48h-ZNF214_MA1975.2 13 bp overlap
Motif DE_60h DE_60h-ZNF214_MA1975.2 13 bp overlap
Motif DE_60h DE_60h-ZNF214_MA1975.2 13 bp overlap
ZNF384 2 datasets
Motif DE_60h DE_60h-ZNF384_MA1125.2 8 bp overlap
Motif DE_72h DE_72h-ZNF384_MA1125.2 8 bp overlap
ZNF768 2 datasets
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap
Zfp335 1 dataset
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap