chr3 : 107,578,604 – 107,578,810
206 bp 39 TFs 0 linked genes
This 206 bp open chromatin element has no linked target genes and is bound by 39 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:107,573,604 – 107,583,810
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
39 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 156 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 161 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 158 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 82 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 181 bp overlap
CTCF 100 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 206 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 130 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 116 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 206 bp overlap
ChIP A673 ENCFF123WOM 206 bp overlap
ChIP A673 ENCFF123WOM 149 bp overlap
ChIP AG04449 ENCFF248MBD 181 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP DND-41 ENCFF913MRA 206 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 188 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 206 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 144 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 127 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 112 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 206 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 98 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 98 bp overlap
ChIP GM12878 ENCFF485TGR 186 bp overlap
ChIP GM23338 ENCFF772DML 182 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 178 bp overlap
ChIP H1 ENCFF764RHO 206 bp overlap
ChIP H9 ENCFF152GTF 188 bp overlap
ChIP HCT116 ENCFF209YMI 206 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 141 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 123 bp overlap
ChIP Kasumi-1_ctrl GSE121280.CTCF.Kasumi-1_ctrl 135 bp overlap
ChIP Kasumi-1_siRE GSE121280.CTCF.Kasumi-1_siRE 113 bp overlap
ChIP Loucy ENCFF359TVQ 206 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 203 bp overlap
ChIP MCF-7 ENCFF198DQX 197 bp overlap
ChIP MCF-7 ENCFF414SZG 177 bp overlap
ChIP MCF-7 ENCFF424NQR 176 bp overlap
ChIP MCF-7 ENCFF494VXA 197 bp overlap
ChIP MCF-7 ENCFF844STM 176 bp overlap
ChIP MCF-7 ENCFF954TUV 188 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 169 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 192 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 145 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 123 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 162 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 191 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 206 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 125 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 167 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 174 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 139 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 206 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 111 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 206 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 206 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 206 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 138 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 128 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 202 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 206 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 150 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 194 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 206 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 160 bp overlap
ChIP WI38 ENCFF841AXJ 206 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 164 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 118 bp overlap
ChIP brain ENCFF163BBN 206 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 206 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 206 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 182 bp overlap
ChIP chondrocyte ENCFF134ORZ 206 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 206 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 206 bp overlap
ChIP endodermal cell ENCFF471YCZ 206 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 188 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 137 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 171 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 206 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 206 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 138 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 162 bp overlap
ChIP fibroblast_MAMMARY ENCSR000DUU.CTCF.fibroblast_MAMMARY 115 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 189 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 103 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 206 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 206 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 206 bp overlap
ChIP heart right ventricle ENCFF027ORH 206 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 108 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 126 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 172 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 140 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 142 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 130 bp overlap
ChIP islet ERP004003.CTCF.islet 177 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 166 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 164 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 170 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 206 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 142 bp overlap
ChIP osteoblast ENCFF491ZJZ 206 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 206 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 206 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 175 bp overlap
ERF::FOXO1 1 dataset
Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 126 bp overlap
ESR1 4 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 169 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 196 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 180 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 186 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 165 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 154 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 165 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 206 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 206 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 110 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 179 bp overlap
NEUROD1 1 dataset
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 108 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF967OJF 206 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 90 bp overlap
SMC1A 2 datasets
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 135 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 206 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 156 bp overlap
SRF 1 dataset
ChIP GM12878 ENCSR000BMI.SRF.GM12878 64 bp overlap
TCF7L1 2 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 180 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 177 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 147 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
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